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Why does Hisat2 report a different number of aligned pairs than samtools view?
RNA-Seq samtools
updated 2.5 years ago by • 0 • written 4.7 years ago by ▴ 110
4
votes
1
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1.6k
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Ensembl Homology: Human orthologs of mouse genes labled "many2many" but correspond to a single mouse ortholog
homology Ensembl
updated 3.9 years ago by ▴ 270 • written 4.1 years ago by ▴ 110
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1
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5.1k
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Comment: Comment: WGCNA adjust p value
3.9 years ago by adam.faranda ▴ 110
1
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2
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5.1k
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Answer: Answer: WGCNA adjust p value
3.9 years ago by adam.faranda ▴ 110
0
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0
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4.7k
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Comment: Comment: DESeq2 count matrix read in
4.1 years ago by adam.faranda ▴ 110
0
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1
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4.7k
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Answer: Answer: DESeq2 count matrix read in
4.1 years ago by adam.faranda ▴ 110
1
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2
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3.7k
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HISAT2 Error Building Index
hisat2 RNA-Seq
updated 4.3 years ago by 20 • written 5.6 years ago by ▴ 110
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0
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1.4k
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Comment: C: inner-distance plot created by inner_distance.py is always right-skewed
4.7 years ago by adam.faranda ▴ 110
0
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1
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2.9k
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Choosing between edgeR's exactTest and QLFTest for 2x2 design
edgeR RNA-Seq
5.2 years ago by adam.faranda ▴ 110
3
votes
3
replies
2.2k
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How to Interpret FDR-TPR (or FDP-TPR) Curves
RNA-Seq
updated 5.6 years ago by 20 • written 5.6 years ago by ▴ 110
0
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1
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6.3k
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Comment: C: RSEM Error - rsem-calculate-expression
5.6 years ago by adam.faranda ▴ 110
1
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1
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3.7k
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Answer: A: HISAT2 Error Building Index
5.6 years ago by adam.faranda ▴ 110
1
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1
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2.5k
views
Comment: C: What is the best tool for doing Quality Control checks on my raw RNA-seq data?
5.6 years ago by adam.faranda ▴ 110
3
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1
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2.5k
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Answer: A: What is the best tool for doing Quality Control checks on my raw RNA-seq data?
5.6 years ago by adam.faranda ▴ 110
1
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0
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925
views
What impact does sorting by read name have on RSEM abundance estimates
RNA-Seq RSEM
updated 2.0 years ago by 45k • written 5.6 years ago by ▴ 110
0
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0
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6.9k
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Comment: C: STAR-RSEM RNA-seq pipeline is deterministic?
5.6 years ago by adam.faranda ▴ 110
0
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1
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1.6k
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Duplicates in Biomart Query, Ensembl ID maps to multiple Entrez genes.
Ensembl NCBI biomaRt
updated 5.8 years ago by 20 • written 5.9 years ago by ▴ 110
0
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1
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2.9k
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Comment: C: PCA on RNAseq time series data
5.9 years ago by adam.faranda ▴ 110
0
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0
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2.9k
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Comment: C: PCA on RNAseq time series data
5.9 years ago by adam.faranda ▴ 110
0
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1
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2.9k
views
Answer: A: PCA on RNAseq time series data
5.9 years ago by adam.faranda ▴ 110
0
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1
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895
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Best Methods for Measuring the similarity of two pairwise Gene Expression contrasts
RNA-Seq microarray differential expression
5.9 years ago by adam.faranda ▴ 110
0
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1
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2.0k
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Comment: C: Analyze normalized illumina microarray data
5.9 years ago by adam.faranda ▴ 110
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0
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1.8k
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Answer: A: Mysterious genes in my Biomart results (genes that were not part of original que
6.2 years ago by adam.faranda ▴ 110
2
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3
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1.8k
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Mysterious genes in my Biomart results (genes that were not part of original query)
biomart R package('biomaRt')
6.2 years ago by adam.faranda ▴ 110
1
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1
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1.6k
views
why does my biomaRt query return inconsistent dataset lists?
ensembl R biomaRt
6.2 years ago by adam.faranda ▴ 110
0
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0
replies
1.6k
views
DAVID Web Services, Perl Client troubleshooting
software error Perl DAVID SOAP
8.8 years ago by adam.faranda ▴ 110
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