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2
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Am I using Tophat2 correctly? Segment-based junction search error keeps coming up.
RNA-Seq alignment
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 20
5
votes
5
replies
2.0k
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Will you critique/rate my mRNA seq alignment analysis?
RNA-Seq alignment
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 20
5
votes
2
replies
18k
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What is a bam.bai for?
RNA-Seq alignment
updated 8.2 years ago by ★ 2.5k • written 8.2 years ago by ▴ 20
0
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0
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2.0k
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Comment: C: Will you critique/rate my mRNA seq alignment analysis?
8.2 years ago by aswartz85 ▴ 20
2
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2
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2.0k
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I have mRNA seq data from another lab that reports reads by RNA counts. How can I compare to my cufflinks data, which reports FPKM?
alignment RNA-Seq
8.2 years ago by aswartz85 ▴ 20
0
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0
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3.4k
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Comment: C: Created SAM file using Hisat2 alignment. Now trying to convert to sorted.bam, b
8.2 years ago by aswartz85 ▴ 20
0
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1
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3.4k
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Comment: C: Created SAM file using Hisat2 alignment. Now trying to convert to sorted.bam, b
8.2 years ago by aswartz85 ▴ 20
0
votes
4
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3.4k
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Created SAM file using Hisat2 alignment. Now trying to convert to sorted.bam, but samtools just spitting out numerous gzip files
RNA-Seq alignment
8.2 years ago by aswartz85 ▴ 20
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