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16
votes
13
replies
6.8k
views
Why mate-Paired end, Paired-end and Single End reads library to be combined for assembling?
mate-pair paired end single end Assembly
updated 7.1 years ago by 20 • written 8.3 years ago by ▴ 70
0
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1
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3.2k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
7.2 years ago by saranpons3 ▴ 70
0
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0
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3.2k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
7.2 years ago by saranpons3 ▴ 70
0
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2
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3.2k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
7.2 years ago by saranpons3 ▴ 70
0
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0
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3.2k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
7.2 years ago by saranpons3 ▴ 70
10
votes
25
replies
3.2k
views
6 follow
How many A's ,T's , C's and G's in homo sapiens3 reads data set?
genome
7.2 years ago by saranpons3 ▴ 70
0
votes
1
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3.2k
views
Comment: A: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
7.2 years ago by saranpons3 ▴ 70
0
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0
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3.2k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
7.2 years ago by saranpons3 ▴ 70
1
vote
5
replies
3.9k
views
Guidelines to choose K-mer size for De bruijn graph based assembly (2nd generation sequencing reads)?
k-mer de bruijn graph
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 70
0
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1
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3.9k
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Comment: C: Guidelines to choose K-mer size for De bruijn graph based assembly (2nd generati
7.4 years ago by saranpons3 ▴ 70
0
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0
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2.6k
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Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
7.5 years ago by saranpons3 ▴ 70
0
votes
1
reply
2.6k
views
Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
7.5 years ago by saranpons3 ▴ 70
0
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0
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2.2k
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Comment: C: K-mer counter tool should write k-mers occurring only once to the output file?
7.5 years ago by saranpons3 ▴ 70
0
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1
reply
2.2k
views
Comment: C: K-mer counter tool should write k-mers occurring only once to the output file?
7.5 years ago by saranpons3 ▴ 70
0
votes
4
replies
2.2k
views
K-mer counter tool should write k-mers occurring only once to the output file?
kmer kmer counter
updated 7.5 years ago by 102k • written 7.5 years ago by ▴ 70
0
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0
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2.6k
views
Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
7.5 years ago by saranpons3 ▴ 70
4
votes
12
replies
2.6k
views
Where i can find sequencing reads(3rd generation sequencing) data set in which each read length is above 1000bp?
Reads
updated 7.5 years ago by 47k • written 7.5 years ago by ▴ 70
0
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0
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2.6k
views
Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
7.5 years ago by saranpons3 ▴ 70
0
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2
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2.2k
views
Comment: C: Large reads data set which crosses 1TB size?
updated 7.5 years ago by 44k • written 7.5 years ago by ▴ 70
6
votes
9
replies
2.2k
views
Large reads data set which crosses 1TB size?
Genome reads
updated 7.5 years ago by ★ 2.9k • written 7.6 years ago by ▴ 70
0
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0
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2.2k
views
Comment: C: Large reads data set which crosses 1TB size?
7.6 years ago by saranpons3 ▴ 70
0
votes
0
replies
2.0k
views
K-mer scala program improvement in Apache Spark
Spark K-mer Counter
7.8 years ago by saranpons3 ▴ 70
1
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0
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2.5k
views
Comment: C: Can anybody explain what this statement says?
7.9 years ago by saranpons3 ▴ 70
0
votes
3
replies
2.5k
views
Comment: C: Can anybody explain what this statement says?
updated 7.9 years ago by 47k • written 7.9 years ago by ▴ 70
0
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1
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2.5k
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Comment: C: Can anybody explain what this statement says?
7.9 years ago by saranpons3 ▴ 70
5
votes
9
replies
2.5k
views
Can anybody explain what this statement says?
kmer kmer counter
updated 7.9 years ago by 11k • written 7.9 years ago by ▴ 70
4
votes
8
replies
2.5k
views
Where i can find complete genome of any organism?
genome complete
updated 8.0 years ago by 20 • written 8.1 years ago by ▴ 70
0
votes
2
replies
1.6k
views
Does anybody know de novo assembler which can assemble reads of 300 bp which are generated by Illumina MiSeq series sequencers?
Illumina Denovo Assembly
8.0 years ago by saranpons3 ▴ 70
0
votes
0
replies
6.2k
views
Comment: C: Memory Usage Of Abyss Assembler
8.0 years ago by saranpons3 ▴ 70
1
vote
2
replies
1.7k
views
Why we need a distributed assembler based on MPI/Mapreduce when we can store Debruijn graph in a compact way in a single node using FM-index, Bloom …
Assembly denovo debruijn
8.0 years ago by saranpons3 ▴ 70
2
votes
0
replies
1.4k
views
What is the future of De-bruijn graph based assemblers?
Assembly De Bruijn De novo
8.0 years ago by saranpons3 ▴ 70
0
votes
0
replies
8.9k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
8.0 years ago by saranpons3 ▴ 70
0
votes
1
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8.9k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
8.0 years ago by saranpons3 ▴ 70
0
votes
0
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8.9k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
8.0 years ago by saranpons3 ▴ 70
0
votes
1
reply
8.9k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
8.0 years ago by saranpons3 ▴ 70
3
votes
8
replies
8.9k
views
What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,c,g to be converted to uppercase A,T,C,G before simulation?
genome Assembly
8.0 years ago by saranpons3 ▴ 70
0
votes
0
replies
2.5k
views
Comment: C: Where i can find complete genome of any organism?
8.0 years ago by saranpons3 ▴ 70
0
votes
1
reply
1.4k
views
Comment: C: How denovo assemblers handle N's in reads?
8.0 years ago by saranpons3 ▴ 70
1
vote
3
replies
1.4k
views
How denovo assemblers handle N's in reads?
genome assembly
updated 8.0 years ago by 20k • written 8.0 years ago by ▴ 70
0
votes
3
replies
2.5k
views
Is De-Bruijn graph only the best approach for assembling short reads from 2nd generation sequencing technologies?
Assembly genome sequencing
updated 8.0 years ago by 9.8k • written 8.0 years ago by ▴ 70
0
votes
0
replies
2.5k
views
Comment: C: Where i can find complete genome of any organism?
8.1 years ago by saranpons3 ▴ 70
0
votes
0
replies
2.0k
views
Comment: C: Complete genome, simulated reads of any organism for which complete genome is al
8.1 years ago by saranpons3 ▴ 70
0
votes
0
replies
2.0k
views
Comment: C: Complete genome, simulated reads of any organism for which complete genome is al
8.1 years ago by saranpons3 ▴ 70
6
votes
4
replies
2.0k
views
Complete genome, simulated reads of any organism for which complete genome is already determined
Assembly genome
updated 8.1 years ago by 55k • written 8.1 years ago by ▴ 70
0
votes
1
reply
2.5k
views
Comment: C: Where i can find complete genome of any organism?
8.1 years ago by saranpons3 ▴ 70
0
votes
1
reply
2.5k
views
Comment: C: Where i can find complete genome of any organism?
8.1 years ago by saranpons3 ▴ 70
0
votes
0
replies
7.6k
views
Comment: C: What 2 indicates in 2*150 bp, 2*300 bp maximum read length from Illumina website
8.1 years ago by saranpons3 ▴ 70
0
votes
1
reply
7.6k
views
Comment: C: What 2 indicates in 2*150 bp, 2*300 bp maximum read length from Illumina website
updated 8.1 years ago by 47k • written 8.1 years ago by ▴ 70
2
votes
5
replies
7.6k
views
What 2 indicates in 2*150 bp, 2*300 bp maximum read length from Illumina website http://www.illumina.com/systems/sequencing-platforms.html?
illumina read length denovo assembly
updated 8.1 years ago by 47k • written 8.1 years ago by ▴ 70
0
votes
1
reply
1.4k
views
Not able to run Contrail assembler with fasta and fastq file formats...
contrail denovo assembly fasta fastq
8.1 years ago by saranpons3 ▴ 70
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