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2
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1.2k
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How to not align reverse complementary reads?
alignment bwa bowtie
updated 3.4 years ago by 88k • written 3.4 years ago by • 0
2
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4
replies
2.0k
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A simple question about UCSC genome browser
genome
updated 4.2 years ago by 36k • written 4.2 years ago by • 0
0
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1
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2.6k
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Comment: C: Can you tell whether the cell was dead or not using RNA-seq data?
4.4 years ago by dcheng1 • 0
3
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5
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2.6k
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Can you tell whether the cell was dead or not using RNA-seq data?
RNA-Seq
updated 4.4 years ago by ★ 29k • written 4.4 years ago by • 0
5
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3
replies
1.1k
views
Is it common that two publications have the same GEO accession code?
RNA-Seq
updated 4.5 years ago by 102k • written 4.5 years ago by • 0
0
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1
reply
1.8k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
updated 4.8 years ago by 45k • written 4.8 years ago by • 0
0
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12
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1.8k
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Merging multiple fastq files and having IndexError when calling peaks using SICER
ChIP-Seq NGS
updated 4.8 years ago by 20 • written 4.8 years ago by • 0
0
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0
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1.8k
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Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.8 years ago by dcheng1 • 0
0
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1
reply
1.8k
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Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.8 years ago by dcheng1 • 0
0
votes
1
reply
1.8k
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Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.8 years ago by dcheng1 • 0
0
votes
1
reply
1.8k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.8 years ago by dcheng1 • 0
0
votes
1
reply
1.8k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.8 years ago by dcheng1 • 0
7
votes
4
replies
2.9k
views
Which tool is most popular for GO over-representation analysis?
RNA-Seq ChIP-Seq
updated 4.9 years ago by ▴ 540 • written 4.9 years ago by • 0
0
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1
reply
1.3k
views
How to generate high-resolution genome track?
ChIP-Seq RNA-Seq sequencing
updated 5.0 years ago by 13k • written 5.0 years ago by • 0
0
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0
replies
1.5k
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Comment: C: Minimal mapping score of bowtie2
5.7 years ago by dcheng1 • 0
0
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3
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1.5k
views
Minimal mapping score of bowtie2
ChIP-Seq bowtie2 mapping
5.7 years ago by dcheng1 • 0
0
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0
replies
1.0k
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Comment: C: Detect trend among multiple ChIP-seq data
5.8 years ago by dcheng1 • 0
0
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0
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1.0k
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Comment: C: Detect trend among multiple ChIP-seq data
5.8 years ago by dcheng1 • 0
0
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4
replies
1.0k
views
Detect trend among multiple ChIP-seq data
ChIP-Seq
updated 5.8 years ago by 88k • written 5.8 years ago by • 0
0
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0
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1.7k
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Comment: C: Calculate ChIP-seq correlation in promoter regions
6.3 years ago by dcheng1 • 0
0
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1
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1.7k
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Comment: C: Calculate ChIP-seq correlation in promoter regions
6.3 years ago by dcheng1 • 0
1
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4
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1.7k
views
Calculate ChIP-seq correlation in promoter regions
ChIP-Seq sequencing
updated 6.3 years ago by 105k • written 6.3 years ago by • 0
0
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0
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1.5k
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Comment: C: Identify cell types based-on RNA-seq/ChIP-seq data
6.3 years ago by dcheng1 • 0
1
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2
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1.5k
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Identify cell types based-on RNA-seq/ChIP-seq data
RNA-Seq ChIP-Seq sequencing R
updated 6.3 years ago by 105k • written 6.3 years ago by • 0
0
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0
replies
1.9k
views
Comment: C: edgeR/csaw design matrix
6.3 years ago by dcheng1 • 0
1
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2
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1.9k
views
edgeR/csaw design matrix
ChIP-Seq RNA-Seq R
updated 6.3 years ago by 35k • written 6.3 years ago by • 0
4
votes
3
replies
1.8k
views
Differential binding ChIP-seq/RNA-seq analysis
ChIP-Seq sequencing
updated 6.3 years ago by ★ 8.1k • written 6.3 years ago by • 0
0
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0
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1.8k
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Comment: A: Differential binding ChIP-seq/RNA-seq analysis
6.3 years ago by dcheng1 • 0
0
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1
reply
3.2k
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Comment: C: Macs called peaks shorter than 1kb
6.7 years ago by dcheng1 • 0
0
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1
reply
3.2k
views
Comment: C: Macs called peaks shorter than 1kb
6.7 years ago by dcheng1 • 0
0
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1
reply
3.2k
views
Comment: C: Macs called peaks shorter than 1kb
6.7 years ago by dcheng1 • 0
0
votes
1
reply
3.2k
views
Comment: C: Macs called peaks shorter than 1kb
6.8 years ago by dcheng1 • 0
5
votes
15
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3.2k
views
Macs called peaks shorter than 1kb
ChIP-Seq
updated 6.8 years ago by 4.1k • written 6.8 years ago by • 0
0
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0
replies
1.8k
views
Comment: A: MACS2 gives negative estimated fragment length
7.3 years ago by dcheng1 • 0
0
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2
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1.8k
views
MACS2 gives negative estimated fragment length
ChIP-Seq
7.3 years ago by dcheng1 • 0
0
votes
2
replies
3.0k
views
Comment: C: Problems with MACS ChIP-Seq peak calling
updated 8.0 years ago by 48k • written 8.0 years ago by • 0
3
votes
6
replies
3.0k
views
Problems with MACS ChIP-Seq peak calling
ChIP-Seq MACS Peak calling
updated 8.0 years ago by ★ 2.1k • written 8.0 years ago by • 0
0
votes
0
replies
3.0k
views
Comment: C: Problems with MACS ChIP-Seq peak calling
8.0 years ago by dcheng1 • 0
0
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0
replies
2.7k
views
Comment: C: how to find the primer for the promoter of VEGF gene?
8.7 years ago by dcheng1 • 0
0
votes
3
replies
2.7k
views
how to find the primer for the promoter of VEGF gene?
ChIP-qPCR VEGF primer design
updated 8.7 years ago by ★ 4.0k • written 8.7 years ago by • 0
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