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1
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2
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994
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How to not align reverse complementary reads?
alignment bwa bowtie
updated 2.8 years ago by 85k • written 2.8 years ago by • 0
2
votes
4
replies
1.5k
views
A simple question about UCSC genome browser
genome
updated 3.7 years ago by 36k • written 3.7 years ago by • 0
0
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1
reply
2.2k
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Comment: C: Can you tell whether the cell was dead or not using RNA-seq data?
3.9 years ago by dcheng1 • 0
3
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5
replies
2.2k
views
Can you tell whether the cell was dead or not using RNA-seq data?
RNA-Seq
updated 3.9 years ago by ★ 28k • written 3.9 years ago by • 0
5
votes
3
replies
921
views
Is it common that two publications have the same GEO accession code?
RNA-Seq
updated 4.0 years ago by 102k • written 4.0 years ago by • 0
0
votes
1
reply
1.5k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
updated 4.2 years ago by 44k • written 4.3 years ago by • 0
0
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12
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1.5k
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Merging multiple fastq files and having IndexError when calling peaks using SICER
ChIP-Seq NGS
updated 4.2 years ago by 20 • written 4.3 years ago by • 0
0
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0
replies
1.5k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.3 years ago by dcheng1 • 0
0
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1
reply
1.5k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.3 years ago by dcheng1 • 0
0
votes
1
reply
1.5k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.3 years ago by dcheng1 • 0
0
votes
1
reply
1.5k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.3 years ago by dcheng1 • 0
0
votes
1
reply
1.5k
views
Comment: C: Merging multiple fastq files and having IndexError when calling peaks using SICE
4.3 years ago by dcheng1 • 0
7
votes
4
replies
2.4k
views
Which tool is most popular for GO over-representation analysis?
RNA-Seq ChIP-Seq
updated 4.4 years ago by ▴ 540 • written 4.4 years ago by • 0
0
votes
1
reply
1.1k
views
How to generate high-resolution genome track?
ChIP-Seq RNA-Seq sequencing
updated 4.4 years ago by 13k • written 4.4 years ago by • 0
0
votes
0
replies
1.3k
views
Comment: C: Minimal mapping score of bowtie2
5.2 years ago by dcheng1 • 0
0
votes
3
replies
1.3k
views
Minimal mapping score of bowtie2
ChIP-Seq bowtie2 mapping
5.2 years ago by dcheng1 • 0
0
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0
replies
890
views
Comment: C: Detect trend among multiple ChIP-seq data
5.2 years ago by dcheng1 • 0
0
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0
replies
890
views
Comment: C: Detect trend among multiple ChIP-seq data
5.2 years ago by dcheng1 • 0
0
votes
4
replies
890
views
Detect trend among multiple ChIP-seq data
ChIP-Seq
updated 5.2 years ago by 85k • written 5.2 years ago by • 0
0
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0
replies
1.5k
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Comment: C: Calculate ChIP-seq correlation in promoter regions
5.8 years ago by dcheng1 • 0
0
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1
reply
1.5k
views
Comment: C: Calculate ChIP-seq correlation in promoter regions
5.8 years ago by dcheng1 • 0
1
vote
4
replies
1.5k
views
Calculate ChIP-seq correlation in promoter regions
ChIP-Seq sequencing
updated 5.8 years ago by 104k • written 5.8 years ago by • 0
0
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0
replies
1.4k
views
Comment: C: Identify cell types based-on RNA-seq/ChIP-seq data
5.8 years ago by dcheng1 • 0
1
vote
2
replies
1.4k
views
Identify cell types based-on RNA-seq/ChIP-seq data
RNA-Seq ChIP-Seq sequencing R
updated 5.8 years ago by 104k • written 5.8 years ago by • 0
0
votes
0
replies
1.8k
views
Comment: C: edgeR/csaw design matrix
5.8 years ago by dcheng1 • 0
1
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2
replies
1.8k
views
edgeR/csaw design matrix
ChIP-Seq RNA-Seq R
updated 5.8 years ago by 35k • written 5.8 years ago by • 0
4
votes
3
replies
1.6k
views
Differential binding ChIP-seq/RNA-seq analysis
ChIP-Seq sequencing
updated 5.8 years ago by ★ 7.7k • written 5.8 years ago by • 0
0
votes
0
replies
1.6k
views
Comment: A: Differential binding ChIP-seq/RNA-seq analysis
5.8 years ago by dcheng1 • 0
0
votes
1
reply
2.6k
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Comment: C: Macs called peaks shorter than 1kb
6.2 years ago by dcheng1 • 0
0
votes
1
reply
2.6k
views
Comment: C: Macs called peaks shorter than 1kb
6.2 years ago by dcheng1 • 0
0
votes
1
reply
2.6k
views
Comment: C: Macs called peaks shorter than 1kb
6.2 years ago by dcheng1 • 0
0
votes
1
reply
2.6k
views
Comment: C: Macs called peaks shorter than 1kb
6.2 years ago by dcheng1 • 0
5
votes
15
replies
2.6k
views
Macs called peaks shorter than 1kb
ChIP-Seq
updated 6.2 years ago by 4.0k • written 6.2 years ago by • 0
0
votes
0
replies
1.7k
views
Comment: A: MACS2 gives negative estimated fragment length
6.8 years ago by dcheng1 • 0
0
votes
2
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1.7k
views
MACS2 gives negative estimated fragment length
ChIP-Seq
6.8 years ago by dcheng1 • 0
0
votes
2
replies
2.8k
views
Comment: C: Problems with MACS ChIP-Seq peak calling
updated 7.5 years ago by 47k • written 7.5 years ago by • 0
3
votes
6
replies
2.8k
views
Problems with MACS ChIP-Seq peak calling
ChIP-Seq MACS Peak calling
updated 7.5 years ago by ★ 2.1k • written 7.5 years ago by • 0
0
votes
0
replies
2.8k
views
Comment: C: Problems with MACS ChIP-Seq peak calling
7.5 years ago by dcheng1 • 0
0
votes
0
replies
2.6k
views
Comment: C: how to find the primer for the promoter of VEGF gene?
8.1 years ago by dcheng1 • 0
0
votes
3
replies
2.6k
views
how to find the primer for the promoter of VEGF gene?
ChIP-qPCR VEGF primer design
updated 8.1 years ago by ★ 4.0k • written 8.1 years ago by • 0
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