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1
vote
1
reply
854
views
Bedtools to make a bed file for promoter
bedtools
updated 4.2 years ago by 11k • written 4.2 years ago by ★ 1.5k
1
vote
1
reply
1.3k
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 4.2 years ago by ▴ 370 • written 4.3 years ago by ★ 1.5k
7
votes
6
replies
2.1k
views
Plant orthologous genes
gene
updated 4.3 years ago by 15k • written 4.3 years ago by ★ 1.5k
11
votes
4
replies
17k
views
Importing Network From Wgcna Into Cytoscape
cytoscape network
updated 2.9 years ago by ▴ 30 • written 11.9 years ago by ★ 1.5k
0
votes
0
replies
1.3k
views
Comment: C: p value for permutation test for gene-interaction data
4.4 years ago by pixie@bioinfo ★ 1.5k
1
vote
3
replies
1.3k
views
p value for permutation test for gene-interaction data
statistics
updated 4.4 years ago by 11k • written 4.4 years ago by ★ 1.5k
0
votes
0
replies
3.3k
views
Answer: A: How to combine two networks
4.5 years ago by pixie@bioinfo ★ 1.5k
3
votes
7
replies
4.3k
views
Statistical test for overlap
statistics
updated 4.5 years ago by ▴ 990 • written 4.5 years ago by ★ 1.5k
0
votes
0
replies
1.9k
views
Comment: C: Boxplots from ChIP-seq Data
4.7 years ago by pixie@bioinfo ★ 1.5k
3
votes
2
replies
1.9k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 4.7 years ago by 9.0k • written 4.7 years ago by ★ 1.5k
0
votes
1
reply
947
views
Heatmap using Interaction/HiCHip data
ngs heatmap
4.9 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
956
views
Job: Post-Doctoral position (Bioinformatics) in the Chromosome Dynamics team at the Institut des Sciences des Plantes - Paris-Saclay (IPS2)
R next-gen ChIP-Seq
updated 18 months ago by 44k • written 4.9 years ago by ★ 1.5k
0
votes
1
reply
895
views
Finding over and under-represented interactions using HOMER
homer hic
5.0 years ago by pixie@bioinfo ★ 1.5k
2
votes
1
reply
7.4k
views
Answer: A: Cytoscape Plug-In For Retrieving Protein-Protein Interactions
updated 5.3 years ago by 44k • written 13.3 years ago by ★ 1.5k
21
votes
15
replies
4.4k
views
Functional Annotation Of Domains...
protein
updated 5.3 years ago by 20 • written 14.3 years ago by ★ 1.5k
0
votes
2
replies
2.8k
views
KEGG pathway visualization AND Cytoscape
KEGG
updated 5.4 years ago by ▴ 20 • written 5.4 years ago by ★ 1.5k
0
votes
0
replies
693
views
Comment: C: Intersecting regions in the genome
5.7 years ago by pixie@bioinfo ★ 1.5k
1
vote
2
replies
693
views
Intersecting regions in the genome
genome
5.7 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
9.0k
views
Comment: C: Unable to map genes to KEGG pathway using pathview
5.7 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.9k
views
Ideas for integrating transcriptomic data/co-expression network and genome-scale metabolic networks
RNA-Seq pathway
5.7 years ago by pixie@bioinfo ★ 1.5k
2
votes
0
replies
1.7k
views
Answer: A: How to get the pathway-protein relationship?
5.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
1.4k
views
Comment: C: Calculating correlations using data from different experimental methods for a co
5.8 years ago by pixie@bioinfo ★ 1.5k
1
vote
1
reply
1.4k
views
Comment: C: Calculating correlations using data from different experimental methods for a co
5.8 years ago by pixie@bioinfo ★ 1.5k
3
votes
6
replies
1.4k
views
Calculating correlations using data from different experimental methods for a co-expression network
RNA-Seq pcr
5.8 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.4k
views
Comment: C: Sequence alignment viewer for a custom database
5.9 years ago by pixie@bioinfo ★ 1.5k
1
vote
2
replies
1.4k
views
Sequence alignment viewer for a custom database
sequence-alignment MSA database clustal
5.9 years ago by pixie@bioinfo ★ 1.5k
2
votes
9
replies
5.8k
views
6 follow
Regarding getting gene count tables for DeSeq from StringTie using prepDE.py
RNA-Seq stringtie
updated 6.0 years ago by • 0 • written 7.3 years ago by ★ 1.5k
0
votes
5
replies
6.6k
views
Wgcna: Exporting Network To Cytoscape For Blockwise Module Construction
r cytoscape network
updated 6.0 years ago by 20 • written 11.2 years ago by ★ 1.5k
0
votes
0
replies
1.2k
views
Comment: C: Suggestion regarding DESeq design of experiment
6.1 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
1.2k
views
Comment: C: Suggestion regarding DESeq design of experiment
6.1 years ago by pixie@bioinfo ★ 1.5k
2
votes
4
replies
1.2k
views
Suggestion regarding DESeq design of experiment
rna-seq
updated 6.1 years ago by ★ 2.6k • written 6.1 years ago by ★ 1.5k
0
votes
2
replies
1.3k
views
Gene regulatory networks from expression data
RNA-Seq network
updated 6.2 years ago by 20 • written 6.3 years ago by ★ 1.5k
1
vote
0
replies
2.5k
views
Comment: C: How to make cluster from gene read count?
6.2 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
2.5k
views
Answer: A: How to make cluster from gene read count?
6.2 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.2k
views
Comment: C: Constructing nucleotide sequence after incorporating SNPs from SIFT file
6.2 years ago by pixie@bioinfo ★ 1.5k
6
votes
3
replies
1.2k
views
Constructing nucleotide sequence after incorporating SNPs from SIFT file
genome
updated 6.2 years ago by 16k • written 6.2 years ago by ★ 1.5k
0
votes
0
replies
1.3k
views
Structure Prediction of Transcription Factor and its binding site to a promoter element
structure
6.3 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
1.2k
views
Answer: A: what next after DEGs?
6.3 years ago by pixie@bioinfo ★ 1.5k
0
votes
2
replies
2.3k
views
Effect of amino acid mutation (deletion) on the protein structure
structure protein mutation
updated 6.3 years ago by 44k • written 6.3 years ago by ★ 1.5k
0
votes
0
replies
3.2k
views
Comment: C: WGCNA-consensus network analysis using RNA-seq data
6.3 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
3.2k
views
Comment: C: WGCNA-consensus network analysis using RNA-seq data
6.3 years ago by pixie@bioinfo ★ 1.5k
2
votes
4
replies
3.2k
views
WGCNA-consensus network analysis using RNA-seq data
RNA-Seq
updated 6.3 years ago by 6.6k • written 6.3 years ago by ★ 1.5k
20
votes
7
replies
15k
views
How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle ucsc coordinates galaxy
updated 6.3 years ago by 44k • written 14.6 years ago by ★ 1.5k
0
votes
2
replies
15k
views
Answer: A: How Do I Get The Gene Names From The Chromosome Locations In A Wig File
updated 6.3 years ago by 44k • written 14.6 years ago by ★ 1.5k
0
votes
0
replies
1.7k
views
Comment: C: Extracting the sequence of isoforms from RNA-seq data
6.4 years ago by pixie@bioinfo ★ 1.5k
3
votes
2
replies
1.7k
views
Extracting the sequence of isoforms from RNA-seq data
RNA-Seq
updated 6.4 years ago by ★ 3.9k • written 6.4 years ago by ★ 1.5k
0
votes
1
reply
968
views
RNA-seq- Alternative spliceforms
RNA-Seq
6.4 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
4.7k
views
Comment: C: Parallel computing while using R packages
6.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
0
replies
4.7k
views
Comment: C: Parallel computing while using R packages
6.5 years ago by pixie@bioinfo ★ 1.5k
0
votes
1
reply
4.7k
views
Comment: C: Parallel computing while using R packages
6.5 years ago by pixie@bioinfo ★ 1.5k
259 results • Page 2 of 6
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