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Comment: Comment: Is there an elegant way to deal with the version indicator in reference FASTA fi
3 months ago by Xiaokang ▴ 80
8
votes
5
replies
533
views
Is there an elegant way to deal with the version indicator in reference FASTA file
FASTA RefSeq
updated 3 months ago by 8.7k • written 3 months ago by ▴ 80
0
votes
0
replies
408
views
One-to-many pairwise alignment
pairwise alignment
2.5 years ago by Xiaokang ▴ 80
10
votes
10
replies
5.3k
views
6 follow
How many index files will be generated from hisat2-build
RNA-Seq HISAT2 index
updated 3.1 years ago by • 0 • written 7.7 years ago by ▴ 80
0
votes
0
replies
477
views
How to interpret the stage_event_gleason_grading in TCGA's prostate cancer clinical info?
Score TCGA Gleason
3.2 years ago by Xiaokang ▴ 80
0
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0
replies
2.0k
views
Comment: Comment: How to make BLASTN be aware of short read?
3.4 years ago by Xiaokang ▴ 80
0
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0
replies
2.0k
views
Comment: Comment: How to make BLASTN be aware of short read?
3.4 years ago by Xiaokang ▴ 80
2
votes
5
replies
2.0k
views
How to make BLASTN be aware of short read?
sequencing blast read blastn
3.4 years ago by Xiaokang ▴ 80
0
votes
1
reply
3.5k
views
Comment: Comment: Why is human genome FASTA file on GENCODE much smaller than that on ENSEMBL?
3.7 years ago by Xiaokang ▴ 80
0
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0
replies
3.5k
views
Comment: Comment: Why is human genome FASTA file on GENCODE much smaller than that on ENSEMBL?
3.8 years ago by Xiaokang ▴ 80
0
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1
reply
3.5k
views
Comment: Comment: Why is human genome FASTA file on GENCODE much smaller than that on ENSEMBL?
3.8 years ago by Xiaokang ▴ 80
12
votes
7
replies
3.5k
views
Why is human genome FASTA file on GENCODE much smaller than that on ENSEMBL?
reference genome GENCODE ENSEMBL
updated 3.7 years ago by 149k • written 3.8 years ago by ▴ 80
0
votes
15
replies
7.6k
views
How to perform DESeq2 based on paired sample test?
RNA-Seq DESeq2
updated 4.4 years ago by • 0 • written 7.7 years ago by ▴ 80
1
vote
1
reply
2.4k
views
How to show an attribute next to the label in Cytoscape
cytoscape
updated 5.2 years ago by ▴ 240 • written 5.2 years ago by ▴ 80
0
votes
0
replies
3.8k
views
Comment: C: How they get such a low adjusted P value in differential analysis of proteomics
5.3 years ago by Xiaokang ▴ 80
0
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0
replies
3.8k
views
Comment: C: How they get such a low adjusted P value in differential analysis of proteomics
5.3 years ago by Xiaokang ▴ 80
1
vote
4
replies
3.8k
views
How they get such a low adjusted P value in differential analysis of proteomics data?
proteomics differential analysis DEP P value FDR
5.3 years ago by Xiaokang ▴ 80
0
votes
0
replies
1.4k
views
How to compare the alignment to genome and transcriptome
RNA-Seq alignment genome transcriptome
updated 5.5 years ago by 86k • written 5.5 years ago by ▴ 80
2
votes
1
reply
2.7k
views
Cytoscape: select edges that are the interactions between two networks
cytoscape interaction network
updated 6.7 years ago by ▴ 580 • written 6.7 years ago by ▴ 80
1
vote
2
replies
3.9k
views
Multiple networks integrated into one figure in Cytoscape
Cytoscape network
updated 6.9 years ago by ▴ 580 • written 6.9 years ago by ▴ 80
0
votes
4
replies
3.1k
views
Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
HMMER protein Pfam
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 80
0
votes
0
replies
1.8k
views
Comment: C: Filter out the information from other organisms in STRING
6.9 years ago by Xiaokang ▴ 80
0
votes
0
replies
1.8k
views
Comment: C: Filter out the information from other organisms in STRING
6.9 years ago by Xiaokang ▴ 80
1
vote
4
replies
1.8k
views
Filter out the information from other organisms in STRING
STRING PPI
6.9 years ago by Xiaokang ▴ 80
0
votes
0
replies
3.1k
views
Comment: C: Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
7.0 years ago by Xiaokang ▴ 80
0
votes
1
reply
3.1k
views
Comment: C: Align protein sequence to Pfam file using HMMER3.0 (hmmalign)
7.0 years ago by Xiaokang ▴ 80
0
votes
0
replies
7.6k
views
Comment: C: How to perform DESeq2 based on paired sample test?
7.7 years ago by Xiaokang ▴ 80
0
votes
1
reply
7.6k
views
Comment: C: How to perform DESeq2 based on paired sample test?
7.7 years ago by Xiaokang ▴ 80
0
votes
1
reply
7.6k
views
Comment: C: How to perform DESeq2 based on paired sample test?
7.7 years ago by Xiaokang ▴ 80
0
votes
0
replies
7.6k
views
Comment: C: How to perform DESeq2 based on paired sample test?
7.7 years ago by Xiaokang ▴ 80
0
votes
2
replies
7.6k
views
Comment: C: How to perform DESeq2 based on paired sample test?
7.7 years ago by Xiaokang ▴ 80
0
votes
0
replies
5.3k
views
Comment: C: How many index files will be generated from hisat2-build
7.7 years ago by Xiaokang ▴ 80
0
votes
0
replies
1.2k
views
Boruta to select all relevant features
feature selection Boruta
updated 7.7 years ago by 165k • written 7.7 years ago by ▴ 80
13
votes
1
reply
9.1k
views
Effective length in normalisation for reads counts
RNA-Seq
updated 7.8 years ago by 7.1k • written 7.8 years ago by ▴ 80
10
votes
3
replies
2.7k
views
Differentially Expressed Genes Analysis with RNA-Seq data
RNA-Seq next-gen DEG
updated 7.8 years ago by 7.6k • written 7.8 years ago by ▴ 80
3
votes
1
reply
4.5k
views
Must I sort the .bam or .sam file before do the feature count?
RNA-Seq
7.9 years ago by Xiaokang ▴ 80
1
vote
0
replies
2.0k
views
Comment: C: How to choose a reference genome when there's no genome information in database
7.9 years ago by Xiaokang ▴ 80
5
votes
4
replies
2.0k
views
How to choose a reference genome when there's no genome information in database for my samples?
RNA-Seq genome next-generation-sequencing
updated 7.9 years ago by ▴ 360 • written 7.9 years ago by ▴ 80
0
votes
0
replies
1.9k
views
How to deal with too-many-zeros genes from TCGA?
RNA-Seq TCGA Classification
8.1 years ago by Xiaokang ▴ 80
0
votes
0
replies
1.5k
views
Comment: A: Feature selection for constructing gene regulatory networks from microarray data
8.2 years ago by Xiaokang ▴ 80
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