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3
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8
replies
2.7k
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Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
RNA-Seq deseq2 stringtie
updated 4.6 years ago by ★ 4.2k • written 6.1 years ago by ▴ 20
2
votes
11
replies
2.9k
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ballgown has "." as Gene Names
ballgown RNA-Seq assembly
updated 5.1 years ago by ▴ 60 • written 6.3 years ago by ▴ 20
0
votes
0
replies
694
views
I am trying to get the promoters of a set of differentially expressed genes
ChIP-Seq RNA-Seq
5.5 years ago by Fawzi Yassine ▴ 20
0
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1
reply
1.2k
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Comment: C: Why is the pValue peaks very high in EpigenomeRoadMap data.
5.5 years ago by Fawzi Yassine ▴ 20
2
votes
3
replies
1.2k
views
Why is the pValue peaks very high in EpigenomeRoadMap data.
ChIP-Seq
updated 5.5 years ago by ★ 1.1k • written 5.5 years ago by ▴ 20
8
votes
4
replies
10k
views
correlations between principal components and known variables
next-gen rna-seq DEseq2
updated 5.5 years ago by ★ 4.2k • written 5.5 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: RNA-seq on data that has two runs per (two `sra` files) sample
5.6 years ago by Fawzi Yassine ▴ 20
0
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1
reply
2.1k
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Comment: C: RNA-seq on data that has two runs per (two `sra` files) sample
5.6 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
2.1k
views
Comment: C: RNA-seq on data that has two runs per (two `sra` files) sample
5.6 years ago by Fawzi Yassine ▴ 20
1
vote
6
replies
2.1k
views
RNA-seq on data that has two runs per (two `sra` files) sample
RNA-Seq alignment
5.6 years ago by Fawzi Yassine ▴ 20
0
votes
0
replies
2.7k
views
Comment: C: Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
2.7k
views
Comment: C: Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
2.7k
views
Comment: C: Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
0
replies
11k
views
Comment: C: Is lfcShrink only useful only for visualization?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
11k
views
Comment: C: Is lfcShrink only useful only for visualization?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
11k
views
Comment: C: Is lfcShrink only useful only for visualization?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
11k
views
Comment: C: Is lfcShrink only useful only for visualization?
6.1 years ago by Fawzi Yassine ▴ 20
6
votes
10
replies
11k
views
Is lfcShrink only useful only for visualization?
RNA-Seq dseq2 Bioconductor R
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
11k
views
Comment: A: Is lfcShrink only useful only for visualization?
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
4.4k
views
Comment: C: lfcShrink function in DEseq2 is giving me an error
6.1 years ago by Fawzi Yassine ▴ 20
3
votes
7
replies
4.4k
views
lfcShrink function in DEseq2 is giving me an error
RNA-Seq
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
2
replies
1.3k
views
getting the test results of multiple transcripts; even though, I am using gene-level analysis
RNA-Seq stringtie
6.1 years ago by Fawzi Yassine ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: ballgown has "." as Gene Names
updated 6.3 years ago by 151k • written 6.3 years ago by ▴ 20
0
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1
reply
2.9k
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Comment: C: ballgown has "." as Gene Names
updated 6.3 years ago by 151k • written 6.3 years ago by ▴ 20
0
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0
replies
2.9k
views
Comment: C: ballgown has "." as Gene Names
6.3 years ago by Fawzi Yassine ▴ 20
0
votes
2
replies
2.9k
views
Answer: A: ballgown has "." as Gene Names
6.3 years ago by Fawzi Yassine ▴ 20
1
vote
1
reply
1.1k
views
Mapping using UCSC and counting using RefSeq
RNA-Seq genome alignment assembly
updated 6.3 years ago by 11k • written 6.3 years ago by ▴ 20
0
votes
1
reply
2.6k
views
Comment: C: Affymetrix Microarray data
7.8 years ago by Fawzi Yassine ▴ 20
3
votes
4
replies
2.6k
views
Affymetrix Microarray data
gene
7.8 years ago by Fawzi Yassine ▴ 20
0
votes
0
replies
1.3k
views
News: Proposal: measuring differentially expressed genes in the cells of FRDA patients following the Ketogenic Diet using RNA-seq
RNA-Seq
updated 23 months ago by 45k • written 8.0 years ago by ▴ 20
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