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Comment: C: Mimic WES on WGS data + A comprehensive list of coding regions in the most biolo
4.9 years ago by lamteva.vera ▴ 220
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2
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Comment: C: Mimic WES on WGS data + A comprehensive list of coding regions in the most biolo
4.9 years ago by lamteva.vera ▴ 220
2
votes
12
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1.5k
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Mimic WES on WGS data + A comprehensive list of coding regions in the most biologically relevant transcripts
BED canonical transcript VCF BAM
4.9 years ago by lamteva.vera ▴ 220
0
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1
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1.5k
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Comment: C: Mimick WES on WGS data + A comprehensive list of coding regions in the most biol
4.9 years ago by lamteva.vera ▴ 220
0
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1
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1.5k
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Comment: C: Mimick WES on WGS data + A comprehensive list of coding regions in the most biol
4.9 years ago by lamteva.vera ▴ 220
1
vote
1
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11k
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Comment: C: BQSR: when it is applicable?
5.3 years ago by lamteva.vera ▴ 220
24
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16
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11k
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6 follow
BQSR: when it is applicable?
GATK BQSR base quality
updated 5.3 years ago by ▴ 60 • written 7.1 years ago by ▴ 220
0
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0
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5.6k
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Comment: C: Is the impact of a frameshift mutation restricted to the exon in which it occurs
7.0 years ago by lamteva.vera ▴ 220
3
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5
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5.6k
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Is the impact of a frameshift mutation restricted to the exon in which it occurs?
frameshift mutation
updated 7.0 years ago by 47k • written 7.0 years ago by ▴ 220
0
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0
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6.6k
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Comment: C: dbSNP not using hg19?
7.0 years ago by lamteva.vera ▴ 220
0
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3
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1.4k
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Should the carrier screening test be restricted to a list of clinically proven pathogenic variants?
carrier-screening NGS clinical-report
updated 18 months ago by 44k • written 7.1 years ago by ▴ 220
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1
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1.4k
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Comment: C: Should the carrier screening test be restricted to a list of clinically proven p
7.1 years ago by lamteva.vera ▴ 220
37
votes
16
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4.5k
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9 follow
Forum: Sanger sequencing is no longer the gold standard?
Sanger NGS
updated 18 months ago by 44k • written 7.1 years ago by ▴ 220
1
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1
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4.5k
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Answer: A: Sanger sequencing is no longer the gold standard?
7.1 years ago by lamteva.vera ▴ 220
1
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1
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4.5k
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Comment: C: Sanger sequencing is no longer the gold standard?
7.1 years ago by lamteva.vera ▴ 220
2
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1
reply
11k
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Comment: C: BQSR: when it is applicable?
7.1 years ago by lamteva.vera ▴ 220
0
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0
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11k
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Comment: C: BQSR: when it is applicable?
7.1 years ago by lamteva.vera ▴ 220
0
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0
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11k
views
Comment: C: BQSR: when it is applicable?
7.1 years ago by lamteva.vera ▴ 220
0
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0
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11k
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Comment: C: BQSR: when it is applicable?
7.1 years ago by lamteva.vera ▴ 220
1
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0
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2.0k
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Soft-clipping primers from BAM introduces errors. Solution?
ValidateSamFile BamClipper Katana soft-clipping
7.1 years ago by lamteva.vera ▴ 220
1
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1
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4.1k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.1 years ago by lamteva.vera ▴ 220
4
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9
replies
4.1k
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Soft-clipping primer sequences in targeted sequencing: approaches and tools
bamclipper soft-clipping PcrClipReads Katana
7.1 years ago by lamteva.vera ▴ 220
1
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0
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4.1k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.1 years ago by lamteva.vera ▴ 220
0
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0
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4.1k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.1 years ago by lamteva.vera ▴ 220
0
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2
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4.1k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.1 years ago by lamteva.vera ▴ 220
0
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1
reply
3.2k
views
Comment: C: From FASTQ to clean BAM using GATK tutorial #6484
7.1 years ago by lamteva.vera ▴ 220
0
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3
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3.2k
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From FASTQ to clean BAM using GATK tutorial #6484
gatk MergeBamAlignment uBAM bamclipper
updated 18 months ago by 44k • written 7.1 years ago by ▴ 220
0
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0
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2.1k
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Comment: C: Different BAM files generated using different commands in bash - which one is ri
7.1 years ago by lamteva.vera ▴ 220
0
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1
reply
2.1k
views
Comment: C: Different BAM files generated using different commands in bash - which one is ri
7.1 years ago by lamteva.vera ▴ 220
0
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1
reply
2.1k
views
Comment: C: Different BAM files generated using different commands in bash - which one is ri
7.1 years ago by lamteva.vera ▴ 220
6
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8
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2.1k
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Different BAM files generated using different commands in bash - which one is right?
BAM bash
7.1 years ago by lamteva.vera ▴ 220
0
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1
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2.7k
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Comment: C: How long does it take to build a pipeline?
7.1 years ago by lamteva.vera ▴ 220
3
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4
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2.7k
views
Forum: How long does it take to build a pipeline?
next-gen self-learning
updated 18 months ago by 44k • written 7.1 years ago by ▴ 220
0
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1
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3.7k
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Comment: C: Which command line programs are parallelizable?
7.1 years ago by lamteva.vera ▴ 220
0
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0
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3.6k
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Comment: C: Sequence length distribution after adapter trimming
7.1 years ago by lamteva.vera ▴ 220
1
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3
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3.6k
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Sequence length distribution after adapter trimming
adapter trimming FastQC bbduk
7.1 years ago by lamteva.vera ▴ 220
0
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0
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6.1k
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Comment: C: Amplicon sequencing: how to handle adapters and primers?
7.1 years ago by lamteva.vera ▴ 220
9
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7
replies
6.1k
views
Amplicon sequencing: how to handle adapters and primers?
amplicon adapter trimming
updated 7.2 years ago by ▴ 630 • written 7.2 years ago by ▴ 220
0
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1
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6.1k
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Comment: C: Amplicon sequencing: how to handle adapters and primers?
7.2 years ago by lamteva.vera ▴ 220
0
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0
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6.6k
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Comment: C: Mask or trim primer sequences in Amplicon sequencing
7.2 years ago by lamteva.vera ▴ 220
1
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1
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3.3k
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Comment: C: How to handle off-target regions in amplicon panel analysis?
7.2 years ago by lamteva.vera ▴ 220
4
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3
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3.3k
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How to handle off-target regions in amplicon panel analysis?
off-target targeted resequencing
updated 7.2 years ago by 88k • written 7.2 years ago by ▴ 220
0
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0
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2.3k
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Comment: C: what should be taken care of during the bioinformatic analysis for targeted rese
7.2 years ago by lamteva.vera ▴ 220
0
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1
reply
4.7k
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Comment: C: Amplicon Sequencing Data Analysis
7.2 years ago by lamteva.vera ▴ 220
0
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0
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6.1k
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Answer: A: What does Picard tools cleansam and fixemate exactly do and what are the equival
7.2 years ago by lamteva.vera ▴ 220
0
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1
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3.9k
views
Comment: C: Should I remove Kmers identified in FastQC?
8.0 years ago by lamteva.vera ▴ 220
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