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Answer: Answer: Recommendation for computational tools to detect gene editing induced INDELs fro
2.4 years ago by francois ▴ 80
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Comment: Comment: Illumina reads clipped at the expected Cas9 double-strand break site – how to in
2.4 years ago by francois ▴ 80
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1.2k
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Comment: Comment: Illumina reads clipped at the expected Cas9 double-strand break site – how to in
2.4 years ago by francois ▴ 80
0
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1
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1.2k
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Comment: Comment: Illumina reads clipped at the expected Cas9 double-strand break site – how to in
2.4 years ago by francois ▴ 80
2
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6
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1.2k
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Illumina reads clipped at the expected Cas9 double-strand break site – how to interpret?
illumina cas9 sequencing crispr miseq
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 80
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Comment: Comment: How to extract variants falling in a genomic window from a VCF?
3.4 years ago by francois ▴ 80
7
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4
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How to extract variants falling in a genomic window from a VCF?
vcf
updated 3.4 years ago by 147k • written 3.4 years ago by ▴ 80
5
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1
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8.6k
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Answer: Answer: convert sam into paf format
3.5 years ago by francois ▴ 80
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8.6k
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Comment: Comment: convert sam into paf format
3.5 years ago by francois ▴ 80
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993
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Comment: Comment: How can I drop the MAPQ info of my sam/bam file?
3.5 years ago by francois ▴ 80
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993
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Comment: Comment: How can I drop the MAPQ info of my sam/bam file?
3.5 years ago by francois ▴ 80
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5
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993
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How can I drop the MAPQ info of my sam/bam file?
bam
updated 3.5 years ago by 8.9k • written 3.5 years ago by ▴ 80
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Comment: Comment: Rsamtools: get nucleotide of read ID X at position P
3.5 years ago by francois ▴ 80
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1.3k
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Comment: Comment: Rsamtools: get nucleotide of read ID X at position P
3.5 years ago by francois ▴ 80
2
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4
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1.3k
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Rsamtools: get nucleotide of read ID X at position P
rsamtools
3.5 years ago by francois ▴ 80
4
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1
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1.0k
views
How to trim alignments in a BAM file to a restricted genomic window?
bam alignment
updated 3.6 years ago by 164k • written 3.6 years ago by ▴ 80
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2
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5.0k
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Comment: Comment: bedtools bamtofastq generates fastq which cannot be gzip correctly?
3.7 years ago by francois ▴ 80
8
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16
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5.0k
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bedtools bamtofastq generates fastq which cannot be gzip correctly?
gzip miseq bedtools fastq bamtofastq
updated 3.7 years ago by 101k • written 3.7 years ago by ▴ 80
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Comment: Comment: bedtools bamtofastq generates fastq which cannot be gzip correctly?
3.7 years ago by francois ▴ 80
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5.0k
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Comment: Comment: bedtools bamtofastq generates fastq which cannot be gzip correctly?
3.7 years ago by francois ▴ 80
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1.6k
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Comment: C: Why does samtools calmd change the NM tag when generating the MD tag?
4.4 years ago by francois ▴ 80
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2
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1.6k
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Why does samtools calmd change the NM tag when generating the MD tag?
sequencing
4.4 years ago by francois ▴ 80
3
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2
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1.4k
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How to report coverage at overlapping regions of paired-end reads?
illumina paired-end
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 80
6
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5
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3.7k
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biomaRt: Cannot access the zebra fish dataset
biomart r
updated 5.2 years ago by ▴ 90 • written 6.9 years ago by ▴ 80
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2
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1.7k
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No reads in IGV at the positions indicated by the bed file
sequencing
5.5 years ago by francois ▴ 80
2
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8
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1.5k
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RNAseq: What's the accurate way to test whether a set of N genes is differentially expressed?
RNA-Seq
updated 5.6 years ago by 104k • written 5.6 years ago by ▴ 80
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3
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1.5k
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Comment: C: RNAseq: What's the accurate way to test whether a set of N genes is differential
5.6 years ago by francois ▴ 80
2
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2
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859
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Can I conclude anything from MiSeq primer reads?
sequencing
updated 5.6 years ago by 9.0k • written 5.6 years ago by ▴ 80
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0
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1.7k
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Comment: C: How to predict non-sense mediated decay from Illumina reads?
5.7 years ago by francois ▴ 80
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1.7k
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Comment: C: How to predict non-sense mediated decay from Illumina reads?
5.7 years ago by francois ▴ 80
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1
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1.7k
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Comment: C: How to predict non-sense mediated decay from Illumina reads?
5.7 years ago by francois ▴ 80
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8
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1.7k
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How to predict non-sense mediated decay from Illumina reads?
sequencing
5.7 years ago by francois ▴ 80
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1.7k
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Comment: C: How to predict non-sense mediated decay from Illumina reads?
5.7 years ago by francois ▴ 80
6
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3
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3.7k
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Why do I have more reads in my .bam file than in my .fastq input file?
alignment bam fastq
updated 6.4 years ago by 164k • written 6.4 years ago by ▴ 80
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2
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1.6k
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Can IGV tell me where to look?
igv nanopore minion
6.4 years ago by francois ▴ 80
3
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6
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2.0k
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IGV not highlighting possible variants
igv
updated 6.4 years ago by 147k • written 6.4 years ago by ▴ 80
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0
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2.0k
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Comment: C: IGV not highlighting possible variants
6.4 years ago by francois ▴ 80
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0
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2.0k
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Answer: A: IGV not highlighting possible variants
6.4 years ago by francois ▴ 80
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2.0k
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Comment: C: IGV not highlighting possible variants
6.4 years ago by francois ▴ 80
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2
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2.0k
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Comment: C: IGV not highlighting possible variants
6.4 years ago by francois ▴ 80
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1
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4.4k
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Comment: C: Where are my reads in IGV?
6.4 years ago by francois ▴ 80
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4.4k
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Comment: C: Where are my reads in IGV?
6.4 years ago by francois ▴ 80
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0
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5.7k
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Comment: C: "Invalid BAM file header: missing sequence name in file" when trying to visualis
6.4 years ago by francois ▴ 80
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1
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4.4k
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Comment: C: Where are my reads in IGV?
6.4 years ago by francois ▴ 80
6
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7
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4.4k
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Where are my reads in IGV?
igv alignment
6.4 years ago by francois ▴ 80
0
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1
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5.7k
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Comment: C: "Invalid BAM file header: missing sequence name in file" when trying to visualis
6.4 years ago by francois ▴ 80
6
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11
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5.7k
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"Invalid BAM file header: missing sequence name in file" when trying to visualise .bam file in IGV
alignment bam igv
updated 6.4 years ago by 47k • written 6.4 years ago by ▴ 80
0
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2
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5.7k
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Comment: A: "Invalid BAM file header: missing sequence name in file" when trying to visualis
6.4 years ago by francois ▴ 80
0
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0
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5.7k
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Comment: A: "Invalid BAM file header: missing sequence name in file" when trying to visualis
6.4 years ago by francois ▴ 80
6
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4
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1.5k
views
Why GWASs cannot speculate what kind of mutation the SNP would cause?
gwas SNP
updated 6.8 years ago by ▴ 600 • written 6.8 years ago by ▴ 80
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