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291
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Pairwise alignment and Ka/Ks computation
Pairwise-Alignment Genomics Ka-Ks
updated 11 months ago by 45k • written 11 months ago by ▴ 200
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0
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1.6k
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Comment: Comment: Recent alternative to LalnView
2.8 years ago by maxime.policarpo ▴ 200
1
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4
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1.6k
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Recent alternative to LalnView
Synteny Evolution Genome Alignment
2.8 years ago by maxime.policarpo ▴ 200
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1
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1.6k
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Answer: Answer: Recent alternative to LalnView
2.9 years ago by maxime.policarpo ▴ 200
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0
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1.5k
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Comment: Comment: Get the coverage after read alignment with bwa-mem2
3.0 years ago by maxime.policarpo ▴ 200
2
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3
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1.5k
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Get the coverage after read alignment with bwa-mem2
coverage alignment bwa-mem2 MAPQ
updated 3.0 years ago by ★ 2.1k • written 3.0 years ago by ▴ 200
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0
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1.1k
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Comment: Comment: Simulation - Evolution of the number of genes
3.0 years ago by maxime.policarpo ▴ 200
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2
replies
1.1k
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Simulation - Evolution of the number of genes
Evolution Phylogeny Gene repertoire Simulation
3.0 years ago by maxime.policarpo ▴ 200
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0
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584
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Interspecific read alignment - Eukaryote
illumina align genome reads organism
3.7 years ago by maxime.policarpo ▴ 200
3
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4
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1.9k
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Make tblastn run faster
blast tblastn genome software
updated 4.2 years ago by ▴ 30 • written 4.2 years ago by ▴ 200
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1
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1.9k
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Comment: C: Make tblastn run faster
4.2 years ago by maxime.policarpo ▴ 200
2
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1
reply
1.2k
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Answer: A: Alternative for phylosim in R
4.4 years ago by maxime.policarpo ▴ 200
6
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2
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3.8k
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Answer: A: Find overlapping blast hits and keep the highest evalue
updated 5.0 years ago by 150k • written 5.0 years ago by ▴ 200
12
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7
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3.8k
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Find overlapping blast hits and keep the highest evalue
blast genome R
5.0 years ago by maxime.policarpo ▴ 200
0
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0
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725
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Answer: A: tblastn extend beyond homology region
5.2 years ago by maxime.policarpo ▴ 200
0
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1
reply
1.1k
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ABC method - Number of individuals
DIYABC ABC Population Genetics
updated 22 months ago by • 0 • written 5.3 years ago by ▴ 200
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0
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5.9k
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Comment: C: Extract every CDS sequences from a VCF file
5.6 years ago by maxime.policarpo ▴ 200
7
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9
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5.9k
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Extract every CDS sequences from a VCF file
alignment VCF CDS
updated 5.6 years ago by 166k • written 5.6 years ago by ▴ 200
4
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0
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5.9k
views
Answer: A: Extract every CDS sequences from a VCF file
5.6 years ago by maxime.policarpo ▴ 200
0
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0
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5.9k
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Comment: C: Extract every CDS sequences from a VCF file
5.6 years ago by maxime.policarpo ▴ 200
0
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0
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5.9k
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Comment: C: Extract every CDS sequences from a VCF file
5.6 years ago by maxime.policarpo ▴ 200
1
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4
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2.1k
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Plot multiple R empricial distributions with different X axis on the same plot
R distribution plot
updated 5.7 years ago by 45k • written 5.7 years ago by ▴ 200
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1
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2.1k
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Comment: C: Plot multiple R empricial distributions with different X axis on the same plot
5.7 years ago by maxime.policarpo ▴ 200
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0
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1.8k
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Answer: A: Predict frameshift mutation consequence tool - causing a premature stop codon do
5.7 years ago by maxime.policarpo ▴ 200
3
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0
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34k
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Answer: A: What is the difference between blastx and tblastn?
5.8 years ago by maxime.policarpo ▴ 200
0
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0
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1.6k
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Comment: C: Get the divergence between two species with a ref genome and reads
6.2 years ago by maxime.policarpo ▴ 200
1
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3
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1.6k
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Get the divergence between two species with a ref genome and reads
Assembly vcf mapping
6.2 years ago by maxime.policarpo ▴ 200
0
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0
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1.6k
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Answer: A: Get the divergence between two species with a ref genome and reads
6.2 years ago by maxime.policarpo ▴ 200
1
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1
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1.2k
views
Answer: A: How can multiarray results have more than 1 gene name for each row?
6.3 years ago by maxime.policarpo ▴ 200
0
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0
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1.6k
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Comment: C: How to conclude in a significant decrease of coverage depth
6.3 years ago by maxime.policarpo ▴ 200
0
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4
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1.6k
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How to conclude in a significant decrease of coverage depth
alignment genome samtools next-gen coverage
updated 6.3 years ago by ★ 2.0k • written 6.3 years ago by ▴ 200
0
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1
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1.6k
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Comment: A: How to conclude in a significant decrease of coverage depth
6.3 years ago by maxime.policarpo ▴ 200
1
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0
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971
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Answer: A: tblastn multiple protein against db
6.4 years ago by maxime.policarpo ▴ 200
1
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0
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1.9k
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Comment: C: Take out One percent of the tops of numbers from the column in the table
6.4 years ago by maxime.policarpo ▴ 200
0
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1
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1.9k
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Answer: A: Take out One percent of the tops of numbers from the column in the table
6.4 years ago by maxime.policarpo ▴ 200
0
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2
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4.2k
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Comment: C: Total CpG genome count
6.8 years ago by maxime.policarpo ▴ 200
0
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1
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2.7k
views
Answer: A: Blast or Blat for multiple sequence alignment to get each respective sequence lo
updated 6.8 years ago by 45k • written 6.8 years ago by ▴ 200
0
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1
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2.7k
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
updated 6.8 years ago by 45k • written 6.8 years ago by ▴ 200
0
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0
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2.7k
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Comment: C: Blast or Blat for multiple sequence alignment to get each respective sequence lo
6.8 years ago by maxime.policarpo ▴ 200
0
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0
replies
4.0k
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Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
11
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22
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4.0k
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Get every variables sites between two aligned CDS sequences
alignment mutation synonymous non-synonymous
updated 6.8 years ago by 16k • written 6.8 years ago by ▴ 200
0
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0
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4.0k
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Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
0
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0
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2.2k
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Comment: C: Mya calculation for estimation of evolutionary time scale
6.8 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
updated 6.8 years ago by 16k • written 6.8 years ago by ▴ 200
0
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1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
0
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1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
0
votes
1
reply
4.0k
views
Comment: C: Get every variables sites between two aligned CDS sequences
6.8 years ago by maxime.policarpo ▴ 200
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