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Comment:
Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
20 months ago by
kk.mahsa
▴ 150
0
votes
1
reply
1.5k
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Comment:
Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
20 months ago by
kk.mahsa
▴ 150
0
votes
5
replies
1.5k
views
How to remove homozygous reference genotypes from multi-sample vcf file based on a threshold
CNV
VCF
Genotype
updated 20 months ago by
cmdcolin
★ 4.0k • written 20 months ago by
kk.mahsa
▴ 150
0
votes
0
replies
962
views
Comment:
Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
21 months ago by
kk.mahsa
▴ 150
0
votes
1
reply
962
views
Comment:
Comment: Missing samples in the output vcf file created using GenotypeGVCFs in GATK
21 months ago by
kk.mahsa
▴ 150
1
vote
4
replies
962
views
Missing samples in the output vcf file created using GenotypeGVCFs in GATK
SNP
GATK
21 months ago by
kk.mahsa
▴ 150
0
votes
0
replies
645
views
Comment:
Comment: f-index in treemix
21 months ago by
kk.mahsa
▴ 150
0
votes
1
reply
645
views
f-index in treemix
treemix
introgression
f-index
21 months ago by
kk.mahsa
▴ 150
0
votes
0
replies
705
views
Comment:
Comment: signature of selection
2.8 years ago by
kk.mahsa
▴ 150
0
votes
2
replies
705
views
signature of selection
WGS
2.8 years ago by
kk.mahsa
▴ 150
25
votes
15
replies
20k
views
7 follow
how can I remove duplicated variants from vcf file?
SNP
vcf
updated 15 months ago by
Ram
44k • written 7.3 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
458
views
detection of signature selection using relative individuals
selection
WGS
2.9 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
912
views
Comment:
Comment: Counting the number of major and minor alleles
3.0 years ago by
kk.mahsa
▴ 150
0
votes
2
replies
912
views
Counting the number of major and minor alleles
VCF
Allele
SNP
3.0 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
1.1k
views
Comment:
Comment: How to convert scaffold name to chromosome number in vcf file
3.0 years ago by
kk.mahsa
▴ 150
3
votes
2
replies
1.1k
views
How to convert scaffold name to chromosome number in vcf file
VCF
Scaffold
Chromosome
3.0 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
441
views
PLINK map format spliiting by chromosome
Splitting
mapfile
PLINK
3.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
1.3k
views
Comment:
Comment: Error:Could not open individual file
3.1 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
1.3k
views
Comment:
Comment: Error:Could not open individual file
3.1 years ago by
kk.mahsa
▴ 150
0
votes
4
replies
1.3k
views
Error:Could not open individual file
Fst
VCF
vcftools
3.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
1.2k
views
Comment:
Comment: Identify most and least abundant allele (nMAJ and nMIN) for pooled heterozygosit
3.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
1.5k
views
Comment:
Comment: Speeding up HaplotypeCaller analysis
3.2 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
1.5k
views
Comment:
Comment: Speeding up HaplotypeCaller analysis
3.2 years ago by
kk.mahsa
▴ 150
1
vote
5
replies
1.5k
views
Speeding up HaplotypeCaller analysis
Linux
CPU
HaplotypeCaller
updated 3.2 years ago by
Pierre Lindenbaum
164k • written 3.2 years ago by
kk.mahsa
▴ 150
0
votes
2
replies
2.3k
views
Comment:
Comment: Use of GenotypeGVCFs in population genetic studies
3.2 years ago by
kk.mahsa
▴ 150
1
vote
6
replies
2.3k
views
Use of GenotypeGVCFs in population genetic studies
WGS
Introgression
GenotypeGVCFs
ADMIXTURE
GATK
updated 3.2 years ago by
vdauwera
★ 1.2k • written 3.2 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
954
views
Comment:
C: Annotation of probes using annotated genome
3.9 years ago by
kk.mahsa
▴ 150
0
votes
3
replies
954
views
Annotation of probes using annotated genome
microarray
probes
affymetrix
annotation
blastn
3.9 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
1.0k
views
Comment:
C: Official software repository
4.9 years ago by
kk.mahsa
▴ 150
6
votes
3
replies
1.0k
views
Official software repository
SNP
software repository
4.9 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
703
views
A practical workflow for microarray gene expression Meta analysis
Meta analysis
Microarray
Gene expression
4.9 years ago by
kk.mahsa
▴ 150
0
votes
2
replies
17k
views
Comment:
C: converting fna format to fasta
updated 5.5 years ago by
Ram
44k • written 7.4 years ago by
kk.mahsa
▴ 150
2
votes
3
replies
1.9k
views
visualization of identified SSRs
SSR
visualize
updated 5.6 years ago by
Biostar
20 • written 7.0 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
2.7k
views
diffrence between number of reads in fastqc reports and collectalignmentsummarymetrics of Picard
Picard
FastQC
BAM
READs
6.0 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
1.3k
views
how to find mammalian-wide interspersed repeats (MIRs) for different mammalian
MIRs
Repetetive elements
updated 6.6 years ago by
Biostar
20 • written 7.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
1.3k
views
Comment:
C: how to get common variants between two species?
6.8 years ago by
kk.mahsa
▴ 150
1
vote
2
replies
1.3k
views
how to get common variants between two species?
SNP
next-gen
common variant
updated 6.8 years ago by
tiago211287
★ 1.5k • written 6.8 years ago by
kk.mahsa
▴ 150
4
votes
2
replies
2.3k
views
CNV detection using beakdancer and SVDetect
SVDetect
breakdancer
CNV
updated 7.0 years ago by
d-cameron
★ 2.9k • written 7.0 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
3.9k
views
bgzf_read error during samtools run
software error
samtools
cnv-seq
bgzf
updated 7.0 years ago by
Devon Ryan
104k • written 7.0 years ago by
kk.mahsa
▴ 150
2
votes
2
replies
3.6k
views
SRA submission problem
SRA
Aspera connect
NCBI
7.0 years ago by
kk.mahsa
▴ 150
5
votes
1
reply
2.8k
views
how can i inter into my root directory in SRA (NCBI) and create subdirectory?
SRA
NCBI
updated 7.1 years ago by
Ram
44k • written 7.1 years ago by
kk.mahsa
▴ 150
4
votes
0
replies
2.8k
views
Comment:
C: how can i inter into my root directory in SRA (NCBI) and create subdirectory?
updated 7.1 years ago by
Ram
44k • written 7.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
4.4k
views
Comment:
C: combine two fastq file (paired end) to submit in NCBI
7.1 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
4.4k
views
Comment:
C: combine two fastq file (paired end) to submit in NCBI
7.1 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
1.5k
views
Comment:
A: dividing fastq file into 2 separate files
7.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
4.4k
views
Comment:
C: combine two fastq file (paired end) to submit in NCBI
7.1 years ago by
kk.mahsa
▴ 150
0
votes
1
reply
4.4k
views
Comment:
C: combine two fastq file (paired end) to submit in NCBI
updated 7.1 years ago by
GenoMax
147k • written 7.1 years ago by
kk.mahsa
▴ 150
4
votes
7
replies
4.4k
views
combine two fastq file (paired end) to submit in NCBI
SRA
fastq
updated 7.1 years ago by
GenoMax
147k • written 7.1 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
5.2k
views
Comment:
C: Convert repeat masked out file to bed file format
7.3 years ago by
kk.mahsa
▴ 150
0
votes
0
replies
3.0k
views
Comment:
C: how to combine two output of RepeatMasker?
7.3 years ago by
kk.mahsa
▴ 150
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