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104
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HOMER findPeaks: what does -fdr actually do?
homer atac-seq calling peak dap-seq chip-seq
5 weeks ago by mcsimenc ▴ 20
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0
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235
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stringdb - where is a description of the database download tables?
stringdb
updated 6 weeks ago by 147k • written 6 weeks ago by ▴ 20
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0
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243
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MEME PWM format - what is the meaning of nsites?
motif sequence meme-suite pwm meme
5 months ago by mcsimenc ▴ 20
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1
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1.8k
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Comment: Comment: What is a command-line program to bootstrap multiple protein sequence alignment?
17 months ago by mcsimenc ▴ 20
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1
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1.8k
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Comment: Comment: What is a command-line program to bootstrap multiple protein sequence alignment?
17 months ago by mcsimenc ▴ 20
3
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5
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1.8k
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seqboot ERROR: sequences out of alignment (SOLVED)
alignment sequence protein bootstrap phylogenetics
updated 17 months ago by 85k • written 17 months ago by ▴ 20
0
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0
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674
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snpEff problems adding regulatory regions to database
snp snpEff gwas TFBS
2.3 years ago by mcsimenc ▴ 20
1
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1
reply
559
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GWAS - need software that outputs effect size and se or variance
GWAS
updated 2.4 years ago by ▴ 20 • written 2.4 years ago by ▴ 20
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0
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990
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Comment: Comment: DESeq2 batch effects with nonuniform design matrix
2.5 years ago by mcsimenc ▴ 20
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1
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990
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Comment: Comment: DESeq2 batch effects with nonuniform design matrix
2.5 years ago by mcsimenc ▴ 20
2
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4
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990
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DESeq2 batch effects with nonuniform design matrix
DESeqDataSet DESeq2 batch
updated 18 months ago by 44k • written 2.5 years ago by ▴ 20
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1
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1.0k
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Comment: Comment: DESeq2 use of factors for colData
2.5 years ago by mcsimenc ▴ 20
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3
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1.0k
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DESeq2 use of factors for colData
DESeq2 expression differential
updated 2.5 years ago by 14k • written 2.5 years ago by ▴ 20
0
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1
reply
3.1k
views
DeepTools plotProfile y axis units?
deeptools plotprofile plotheatmap
updated 4.0 years ago by 104k • written 4.0 years ago by ▴ 20
1
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1
reply
2.2k
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cellranger: min gene count and UMI/cell filter?
10x genomics cellranger qc scRNA-seq
updated 4.1 years ago by 14k • written 4.1 years ago by ▴ 20
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1
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7.0k
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Comment: C: NCBI SRA AWS AMI
4.2 years ago by mcsimenc ▴ 20
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0
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1.2k
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Comment: A: Salmon auxiliary output
4.4 years ago by mcsimenc ▴ 20
0
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1
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1.4k
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Interpreting jmodeltest2 using transposon sequences results
jmodeltest2 transposon long terminal repeats model
updated 4.4 years ago by • 0 • written 7.5 years ago by ▴ 20
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2
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1.0k
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Tool or DB to find candidate transcription factors from promoter sequences? Arabidopsis
transcription factor promoter database
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 20
0
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0
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937
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NCBI's tbl2asn for sequin files for GenBank submissions - what else does the program do in the system?
GenBank tbl2asn MacOS sandboxing
5.7 years ago by mcsimenc ▴ 20
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0
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5.2k
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Comment: A: Assembling PacBio reads using a reference genome
5.8 years ago by mcsimenc ▴ 20
6
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2
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2.7k
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Where can I find GMAP? All links appear dead. Was the project abandoned?
gmap gsnap alignment software availability
updated 2.7 years ago by 147k • written 6.1 years ago by ▴ 20
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0
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1.7k
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PASTEC repeat classification software (part of REPET) help needed
repeat classification repet pastec parallel torque
7.9 years ago by mcsimenc ▴ 20
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