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635
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Differential gene expression pattern changes while using nuclear/unspliced counts
model kallisto mixed DEG
updated 16 months ago by ★ 6.9k • written 16 months ago by ▴ 10
0
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0
replies
362
views
How to use python packages for mixed model while differential testing?
DGE mixed model lme4 MAST
2.4 years ago by akilabioinfo ▴ 10
0
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0
replies
702
views
Problem in Installing Seurat in rpy2.robjects
Seurat.geos rpy2
2.5 years ago by akilabioinfo ▴ 10
0
votes
0
replies
1.4k
views
Comment: Comment: "NaN " values are copied instead of float values (pd dataframe to adata.obs)
updated 2.5 years ago by 44k • written 2.5 years ago by ▴ 10
0
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1
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1.4k
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Comment: Comment: "NaN " values are copied instead of float values (pd dataframe to adata.obs)
2.5 years ago by akilabioinfo ▴ 10
1
vote
5
replies
1.4k
views
"NaN " values are copied instead of float values (pd dataframe to adata.obs)
pandas anndata
updated 2.5 years ago by 44k • written 2.5 years ago by ▴ 10
0
votes
0
replies
385
views
Empty droplets- Knee/inflection cutoff python module
QC kneeplot dropseq
2.6 years ago by akilabioinfo ▴ 10
0
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1
reply
1.1k
views
Comment: Comment: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
2.6 years ago by akilabioinfo ▴ 10
1
vote
3
replies
1.1k
views
Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
velocity DEG count RNA
updated 2.6 years ago by ★ 6.9k • written 2.6 years ago by ▴ 10
0
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1
reply
1.7k
views
Comment: Comment: RNA velocity similar mtx for spliced and unspliced region (dropseq)
2.8 years ago by akilabioinfo ▴ 10
0
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1
reply
1.7k
views
Comment: Comment: RNA velocity similar mtx for spliced and unspliced region (dropseq)
2.8 years ago by akilabioinfo ▴ 10
1
vote
5
replies
1.7k
views
RNA velocity similar mtx for spliced and unspliced region (dropseq)
Dropseq RNAvelocity Kallisto-bustools
updated 17 months ago by 44k • written 2.8 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Differential transcript usage StageR error message
DRIMSEQ BIOCONDUCTOR DTU stage-R R
updated 6.0 years ago by 12k • written 6.0 years ago by ▴ 10
12
votes
12
replies
8.3k
views
What is the advantage of variant calling using RNA-seq technique?
RNA-Seq galaxy variant calling
updated 6.1 years ago by ▴ 50 • written 6.5 years ago by ▴ 10
0
votes
2
replies
2.2k
views
How to perform eQTL study if i have small sample size?
eQTL GWAS SNP RNA-Seq
updated 6.5 years ago by ▴ 200 • written 6.5 years ago by ▴ 10
0
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1
reply
8.3k
views
Comment: C: What is the advantage of variant calling using RNA-seq technique?
6.5 years ago by akilabioinfo ▴ 10
0
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0
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8.3k
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Comment: C: What is the advantage of variant calling using RNA-seq technique?
6.5 years ago by akilabioinfo ▴ 10
0
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1
reply
2.0k
views
Comment: C: Differential gene expression results are different while using hg19 and hg38 gen
6.5 years ago by akilabioinfo ▴ 10
2
votes
7
replies
2.0k
views
Differential gene expression results are different while using hg19 and hg38 genomic assembly
RNA-Seq galaxy cufflink featurecounts stringtie
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 10
0
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0
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2.0k
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Comment: C: How to identify the SiRNA abundance from transcriptome data
7.2 years ago by akilabioinfo ▴ 10
0
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4
replies
2.0k
views
How to identify the SiRNA abundance from transcriptome data
RNA-Seq sequence galaxy
7.2 years ago by akilabioinfo ▴ 10
0
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1
reply
2.0k
views
Answer: A: How to identify the SiRNA abundance from transcriptome data
7.2 years ago by akilabioinfo ▴ 10
0
votes
1
reply
1.6k
views
Can we use ballgown if i don't have replicates
RNA-Seq R
updated 3.5 years ago by • 0 • written 7.9 years ago by ▴ 10
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