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0
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0
replies
1.1k
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Comment: Comment: Between sample normalization without replicates
20 months ago by GR ▴ 400
0
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1
reply
1.1k
views
Comment: Comment: Between sample normalization with replicates
20 months ago by GR ▴ 400
0
votes
4
replies
1.1k
views
Between sample normalization without replicates
normalization RNA-Seq
20 months ago by GR ▴ 400
0
votes
1
reply
600
views
Extract species-specific SNPs from VCF files
vcf SNPs
updated 17 months ago by 44k • written 21 months ago by ▴ 400
0
votes
1
reply
615
views
How to confirm species for seed material provided
genotyping
updated 22 months ago by 5.0k • written 22 months ago by ▴ 400
5
votes
2
replies
802
views
30 bp sequence that does not show hit within a genome
similarity
updated 22 months ago by 8.7k • written 22 months ago by ▴ 400
1
vote
3
replies
868
views
Extracting all the genes without introns for a species
introns
updated 2.1 years ago by 8.9k • written 2.1 years ago by ▴ 400
0
votes
2
replies
1.5k
views
adapter trimming using trimmomatic
adapter-trimming next-gen-sequencing
updated 2.4 years ago by 44k • written 4.6 years ago by ▴ 400
2
votes
3
replies
1.5k
views
Add Strand tag to hisat2 alignments
rna hisat2
updated 3.7 years ago by 101k • written 3.7 years ago by ▴ 400
0
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1
reply
1.5k
views
Comment: Comment: Add Strand tag to hisat2 alignments
3.7 years ago by GR ▴ 400
2
votes
3
replies
1.6k
views
Conversion to vcf format for quality filtered SNPs
population-data VCF
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 400
0
votes
0
replies
736
views
Comment: C: Adapter sequences for stranded paired end data
4.0 years ago by GR ▴ 400
0
votes
2
replies
736
views
Adapter sequences for stranded paired end data
RNA-Seq adapter sequences
updated 4.0 years ago by 14k • written 4.0 years ago by ▴ 400
0
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1
reply
7.8k
views
Comment: A: Open positions at the Center for Molecular Oncology, MSKCC, New York
4.0 years ago by GR ▴ 400
0
votes
0
replies
1.1k
views
ChIPQC cross-coverage plot
ChIP-Seq cross-coverage Chipqc
4.6 years ago by GR ▴ 400
7
votes
10
replies
6.5k
views
Mapping paired end and single end reads together
mapping
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 400
0
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0
replies
5.7k
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Answer: Answer: snpeff Warnings , transcript incomplete
updated 2.7 years ago by 44k • written 9.8 years ago by ▴ 400
0
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0
replies
6.0k
views
Comment: C: tophat- paired end reads combined in one file
updated 5.1 years ago by 44k • written 10.2 years ago by ▴ 400
0
votes
0
replies
2.4k
views
Answer: A: finding synonymous SNP'S
updated 5.1 years ago by 44k • written 10.3 years ago by ▴ 400
0
votes
0
replies
2.4k
views
Comment: C: finding synonymous SNP'S
updated 5.1 years ago by 44k • written 10.3 years ago by ▴ 400
2
votes
1
reply
2.2k
views
Can We Expect To See A Genomic Region From Different Accession Unaligned?
multiple genomics
updated 5.1 years ago by 20 • written 12.7 years ago by ▴ 400
0
votes
1
reply
702
views
Comment: C: expression evidence for overlapping genes
5.5 years ago by GR ▴ 400
0
votes
3
replies
702
views
expression evidence for overlapping genes
RNA-Seq
5.5 years ago by GR ▴ 400
1
vote
2
replies
3.3k
views
Tools for genome-wide population genetics analysis
DNDS PNPS population-genetics
updated 2.7 years ago by 44k • written 10.2 years ago by ▴ 400
0
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0
replies
1.5k
views
Comment: C: 2x - University Research Fellows - Bioinformatics, University of Adelaide, Adela
6.3 years ago by GR ▴ 400
0
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0
replies
2.0k
views
Comment: C: calculating dn/ds from codeml output
6.5 years ago by GR ▴ 400
0
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2
replies
2.0k
views
calculating dn/ds from codeml output
codeml
6.5 years ago by GR ▴ 400
1
vote
3
replies
2.4k
views
Ribosomal Profiling Dataset For Analyzing Whether The Gene Is Translating Or Not
translation
updated 6.5 years ago by 20 • written 12.3 years ago by ▴ 400
9
votes
10
replies
9.3k
views
How To Correctly Classify Gene Families?
selection classification
updated 6.7 years ago by • 0 • written 12.3 years ago by ▴ 400
0
votes
1
reply
1.4k
views
Data mining for 300 genes from GEO
geo
updated 6.7 years ago by 20 • written 7.5 years ago by ▴ 400
0
votes
3
replies
7.7k
views
Comment: C: Select top differentially expressed genes based on both p-value and fold-change
7.6 years ago by GR ▴ 400
8
votes
7
replies
7.7k
views
Select top differentially expressed genes based on both p-value and fold-change
RNA-Seq differential-expression DESeq2
updated 7.6 years ago by 5.8k • written 7.6 years ago by ▴ 400
0
votes
2
replies
3.7k
views
meme-suite: How does FIMO works?
meme-suite motif identification FIMO
updated 7.6 years ago by 5.8k • written 7.7 years ago by ▴ 400
0
votes
1
reply
2.8k
views
macs2 warnings unknown sequencing problem
chipseq single end data macs2
7.6 years ago by GR ▴ 400
1
vote
2
replies
1.8k
views
pybedtools change fasta headers
pybedtools python
7.7 years ago by GR ▴ 400
15
votes
8
replies
13k
views
How to extract all the mapped reads from bwa output
bwa fastq mapping
updated 2.7 years ago by 44k • written 9.8 years ago by ▴ 400
0
votes
3
replies
3.4k
views
Chip-seq on pooled replicates
ChIP-Seq pooled replicates
updated 7.8 years ago by 7.6k • written 7.8 years ago by ▴ 400
0
votes
0
replies
2.4k
views
Comment: C: Macs2 failed for pooled samples
7.8 years ago by GR ▴ 400
0
votes
2
replies
2.4k
views
Macs2 failed for pooled samples
ChIP-Seq macs2
updated 7.8 years ago by 7.6k • written 7.8 years ago by ▴ 400
3
votes
1
reply
1.4k
views
samtools flag 1548
samtools Bitwise Flags
updated 7.8 years ago by 164k • written 7.8 years ago by ▴ 400
0
votes
2
replies
1.8k
views
Literature mining based on gene annotation
data-mining annotations
updated 7.9 years ago by ★ 4.0k • written 7.9 years ago by ▴ 400
0
votes
0
replies
3.2k
views
Comment: C: Implementing McDonald-Kreitman test
8.0 years ago by GR ▴ 400
2
votes
2
replies
3.2k
views
Implementing McDonald-Kreitman test
population-genetics Mcdonald-Krietman test
updated 8.0 years ago by ▴ 310 • written 10.4 years ago by ▴ 400
0
votes
0
replies
1.6k
views
Comment: C: Identification of network root and building parent child relationship
8.4 years ago by GR ▴ 400
0
votes
2
replies
1.6k
views
Identification of network root and building parent child relationship
gene networks python networkx
8.4 years ago by GR ▴ 400
0
votes
1
reply
3.4k
views
Comment: C: Gene id to gene name mapping
8.4 years ago by GR ▴ 400
1
vote
4
replies
3.4k
views
Gene id to gene name mapping
gene id gene name
8.4 years ago by GR ▴ 400
0
votes
2
replies
5.4k
views
Comment: C: Improving alignment rates for RNA-seq
8.5 years ago by GR ▴ 400
2
votes
2
replies
2.6k
views
How to calculate FPKM from the reads mapped to two genomes
FPKM RNA-seq allele-specific-expression
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 400
0
votes
1
reply
5.5k
views
Comment: C: Using ML tree or bootstrapped tree
9.4 years ago by GR ▴ 400
155 results • Page 1 of 4
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