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comments
0
votes
1
reply
549
views
Comment:
Comment: Issue with converting Affy IDs to gene IDs/symbols
4 months ago by
rbronste
▴ 420
0
votes
1
reply
549
views
Comment:
Comment: Issue with converting Affy IDs to gene IDs/symbols
4 months ago by
rbronste
▴ 420
5
votes
6
replies
549
views
Issue with converting Affy IDs to gene IDs/symbols
biomart
affymetrix
GEOquery
microarray
updated 4 months ago by
yura.grabovska
▴ 660 • written 4 months ago by
rbronste
▴ 420
0
votes
0
replies
248
views
Music2 human to mouse deconvolution
deconvolution
liftover
music2
8 months ago by
rbronste
▴ 420
0
votes
0
replies
351
views
scVelo cell transitions from marker gene expressing cells
velocity
scvelo
RNA
12 months ago by
rbronste
▴ 420
2
votes
2
replies
548
views
Splice junction SNPs
SNP
splicing
isoform
updated 12 months ago by
Jeremy Leipzig
22k • written 12 months ago by
rbronste
▴ 420
0
votes
0
replies
953
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
13 months ago by
rbronste
▴ 420
0
votes
1
reply
953
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
13 months ago by
rbronste
▴ 420
0
votes
2
replies
953
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
13 months ago by
rbronste
▴ 420
0
votes
1
reply
953
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
13 months ago by
rbronste
▴ 420
3
votes
9
replies
953
views
STARsolo seg fault without readMapNumber flag
STAR
RNA-seq
STARsolo
Velocyto
updated 13 months ago by
Ram
44k • written 13 months ago by
rbronste
▴ 420
0
votes
0
replies
871
views
Comment:
Comment: Adding Salmon Alevin counts to clustered Seurat object
16 months ago by
rbronste
▴ 420
0
votes
1
reply
871
views
Comment:
Comment: Adding Salmon Alevin counts to clustered Seurat object
16 months ago by
rbronste
▴ 420
2
votes
4
replies
871
views
Adding Salmon Alevin counts to clustered Seurat object
salmon
seurat
alevin
16 months ago by
rbronste
▴ 420
0
votes
0
replies
1.5k
views
Converting objects between Seurat versions
Seurat
16 months ago by
rbronste
▴ 420
0
votes
1
reply
1.1k
views
Comment:
Comment: RangedSummarizedExperiment to Sparse Matrix
20 months ago by
rbronste
▴ 420
1
vote
3
replies
1.1k
views
RangedSummarizedExperiment to Sparse Matrix
dgCMatrix
sparse
RangedSummarizedExperiment
matrix
updated 20 months ago by
ATpoint
85k • written 20 months ago by
rbronste
▴ 420
0
votes
0
replies
961
views
Comment:
Comment: Combining TF PWMs
22 months ago by
rbronste
▴ 420
0
votes
0
replies
961
views
Comment:
Comment: Combining TF PWMs
23 months ago by
rbronste
▴ 420
1
vote
3
replies
961
views
Combining TF PWMs
TF
Jaspar
motif
PWM
22 months ago by
rbronste
▴ 420
0
votes
0
replies
424
views
Signac MACS2 peak shape question
snATAC-seq
snRNA-seq
signac
multiome
seurat
2.3 years ago by
rbronste
▴ 420
0
votes
0
replies
782
views
Comment:
Comment: Adding to 10X genome.fa and genes.gtf files
2.6 years ago by
rbronste
▴ 420
2
votes
2
replies
782
views
Adding to 10X genome.fa and genes.gtf files
10x
Genomics
multiome
scRNA-seq
2.6 years ago by
rbronste
▴ 420
0
votes
0
replies
727
views
Comment:
Comment: Identifying rosa locus expression in snRNA-seq
2.6 years ago by
rbronste
▴ 420
0
votes
0
replies
727
views
Comment:
Comment: Identifying rosa locus expression in snRNA-seq
2.7 years ago by
rbronste
▴ 420
0
votes
3
replies
727
views
Identifying rosa locus expression in snRNA-seq
rosa
locus
snRNA-seq
reporter
scRNA-seq
2.6 years ago by
rbronste
▴ 420
2
votes
3
replies
3.1k
views
liftOver narrowPeak file
liftOver
Assembly
updated 3.1 years ago by
kai_bio
▴ 50 • written 7.8 years ago by
rbronste
▴ 420
1
vote
2
replies
3.8k
views
BED intersects/overlaps output for Venn diagrams - single column
bedtools
bedops
updated 4.1 years ago by
esimonova.me
▴ 30 • written 7.5 years ago by
rbronste
▴ 420
3
votes
12
replies
7.4k
views
Blacklisted regions for mm10
ChIP-Seq
blacklisted regions
updated 4.2 years ago by
ATpoint
85k • written 7.6 years ago by
rbronste
▴ 420
4
votes
3
replies
1.0k
views
Seurat code availability for published papers
seurat
scRNA-seq
4.6 years ago by
rbronste
▴ 420
5
votes
2
replies
3.0k
views
Official gene symbol list to BED file
bed
gene symbol
DEseq2
updated 4.7 years ago by
nathan bowen
▴ 20 • written 6.8 years ago by
rbronste
▴ 420
0
votes
1
reply
1.7k
views
Comment:
C: grep sorting question
4.8 years ago by
rbronste
▴ 420
0
votes
0
replies
1.7k
views
Comment:
C: grep sorting question
4.8 years ago by
rbronste
▴ 420
0
votes
1
reply
1.7k
views
Comment:
C: grep sorting question
4.8 years ago by
rbronste
▴ 420
3
votes
11
replies
1.7k
views
grep sorting question
grep
awk
sed
bash
unix
updated 4.8 years ago by
Ram
44k • written 4.8 years ago by
rbronste
▴ 420
0
votes
1
reply
1.7k
views
Comment:
C: grep sorting question
4.8 years ago by
rbronste
▴ 420
0
votes
1
reply
5.3k
views
Comment:
Comment: multiple bed - merge regions IF overlapping more than xx percent of size
updated 22 months ago by
Ram
44k • written 4.8 years ago by
rbronste
▴ 420
0
votes
0
replies
799
views
ggplot2 loess curve application to 2 dataframes
ggplot2
ggplot
4.8 years ago by
rbronste
▴ 420
5
votes
3
replies
2.8k
views
EnhancedVolcano R pdf export size
EnhancedVolcano
volcano plot
R
updated 4.8 years ago by
zx8754
12k • written 4.8 years ago by
rbronste
▴ 420
0
votes
1
reply
2.8k
views
Comment:
C: EnhancedVolcano R pdf export size
4.8 years ago by
rbronste
▴ 420
0
votes
0
replies
848
views
Comment:
C: Difficult filtering scenario of BED file
4.8 years ago by
rbronste
▴ 420
2
votes
3
replies
848
views
Difficult filtering scenario of BED file
awk
sed
grep
4.8 years ago by
rbronste
▴ 420
4
votes
6
replies
964
views
awk for interval midpoints and length
awk
updated 4.8 years ago by
zx8754
12k • written 4.8 years ago by
rbronste
▴ 420
0
votes
1
reply
2.8k
views
Comment:
C: How to extend variable length intervals to the same final length?
4.9 years ago by
rbronste
▴ 420
1
vote
0
replies
12k
views
Comment:
C: Enhanced Volcano removal of labels
4.9 years ago by
rbronste
▴ 420
12
votes
4
replies
12k
views
Enhanced Volcano removal of labels
EnhancedVolcano
volcano plot
updated 4.9 years ago by
Kevin Blighe
88k • written 4.9 years ago by
rbronste
▴ 420
0
votes
0
replies
12k
views
Comment:
C: Enhanced Volcano removal of labels
4.9 years ago by
rbronste
▴ 420
0
votes
1
reply
4.7k
views
Comment:
C: Color labeled points in Enhanced Volcano
4.9 years ago by
rbronste
▴ 420
4
votes
5
replies
4.7k
views
Color labeled points in Enhanced Volcano
volcano plot
EnhancedVolcano
4.9 years ago by
rbronste
▴ 420
0
votes
1
reply
4.7k
views
Comment:
C: Color labeled points in Enhanced Volcano
4.9 years ago by
rbronste
▴ 420
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