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8
votes
3
replies
2.9k
views
Adding ggplot2 chromosome position variable
ggplot2 plot genomic ranges R
updated 5.0 years ago by ★ 3.4k • written 5.0 years ago by ▴ 420
2
votes
2
replies
930
views
Plotting matrix of values around specific genomic position
R data.frame matrix ggplot2
updated 5.0 years ago by 12k • written 5.0 years ago by ▴ 420
0
votes
1
reply
2.6k
views
Comment: C: Common gene names list to BED with +/- TSS intervals
5.0 years ago by rbronste ▴ 420
0
votes
1
reply
994
views
Comment: C: Combining two BED files based on shared criteria
5.0 years ago by rbronste ▴ 420
1
vote
3
replies
994
views
Combining two BED files based on shared criteria
bedtools bedops bed interval
5.0 years ago by rbronste ▴ 420
0
votes
1
reply
12k
views
Comment: C: Color points on an Enhanced Volcano Plot based on external intervals
5.0 years ago by rbronste ▴ 420
1
vote
3
replies
12k
views
Color points on an Enhanced Volcano Plot based on external intervals
plotting volcano plot
5.0 years ago by rbronste ▴ 420
0
votes
1
reply
9.5k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
5.0 years ago by rbronste ▴ 420
1
vote
1
reply
919
views
Plotting range/type of discordance in alignment data
bowtie2 sequence alignment
5.1 years ago by rbronste ▴ 420
0
votes
0
replies
5.3k
views
Comment: C: multiple bed - merge regions IF overlapping more than xx percent of size
5.1 years ago by rbronste ▴ 420
0
votes
1
reply
5.3k
views
Comment: C: multiple bed - merge regions IF overlapping more than xx percent of size
5.1 years ago by rbronste ▴ 420
2
votes
3
replies
2.8k
views
Bowtie2 Error: *.* has more quality values than read characters
bowtie2 fastq software error
updated 5.1 years ago by 20 • written 5.2 years ago by ▴ 420
1
vote
0
replies
1.5k
views
Comment: C: Limiting interval sizes with awk
5.2 years ago by rbronste ▴ 420
9
votes
3
replies
1.5k
views
Limiting interval sizes with awk
awk bed bedtools bedops interval
5.2 years ago by rbronste ▴ 420
2
votes
3
replies
3.3k
views
Bamtobed paired mate error
bedtools bedops bamtobed bed
updated 5.2 years ago by 85k • written 5.2 years ago by ▴ 420
0
votes
0
replies
3.3k
views
Comment: C: Bamtobed paired mate error
5.2 years ago by rbronste ▴ 420
4
votes
3
replies
2.2k
views
ggplot density plot across bed file
R ggplot density plot bed bedops
updated 5.2 years ago by 11k • written 5.2 years ago by ▴ 420
4
votes
1
reply
2.9k
views
Filtering BED file for interval length
bedtools bed bedops
5.2 years ago by rbronste ▴ 420
0
votes
0
replies
954
views
Comment: C: Gene names from mixed location BED file
5.3 years ago by rbronste ▴ 420
0
votes
2
replies
954
views
Gene names from mixed location BED file
bed bedops bedtools annotations
5.3 years ago by rbronste ▴ 420
2
votes
2
replies
4.3k
views
Convert DiffBind output to standard BED or NarrowPeak format
DiffBind ChIP-Seq BED NarrowPeak
updated 5.6 years ago by • 0 • written 7.2 years ago by ▴ 420
0
votes
1
reply
1.6k
views
Comment: C: Filtering fastq vs BAM for fragment size range
5.9 years ago by rbronste ▴ 420
1
vote
4
replies
1.6k
views
Filtering fastq vs BAM for fragment size range
alignment bowtie2 bam fastq
5.9 years ago by rbronste ▴ 420
0
votes
1
reply
22k
views
Comment: C: Filtration Of Reads With Length Lower Than 30 From Bam
5.9 years ago by rbronste ▴ 420
0
votes
1
reply
4.1k
views
Comment: C: MNase-seq / fragment size selection
5.9 years ago by rbronste ▴ 420
2
votes
6
replies
2.7k
views
Installing and running pyGenomeTracks
pyGenomeTracks deeptools hicmatrix hicexplorer
updated 6.0 years ago by ▴ 10 • written 6.1 years ago by ▴ 420
2
votes
1
reply
34k
views
Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
6.0 years ago by rbronste ▴ 420
1
vote
0
replies
1.2k
views
Comment: C: Where can I find expression data for APOE gene in humans?
6.0 years ago by rbronste ▴ 420
7
votes
6
replies
1.4k
views
Pulling out interval adjoining regions
bedtools bedops bed interval
updated 6.0 years ago by 36k • written 6.0 years ago by ▴ 420
2
votes
1
reply
1.8k
views
mm10 phyloP download for custom tracks
phyloP conservation UCSC
updated 6.0 years ago by 20 • written 6.1 years ago by ▴ 420
0
votes
0
replies
3.1k
views
Comment: C: How can I correlate ATAC-seq peak signal with enhancer ChIP-seq mark signal (H3K
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
6.0 years ago by rbronste ▴ 420
0
votes
0
replies
995
views
Closest features sort by set distance
bedops bedtools bed intervals
6.0 years ago by rbronste ▴ 420
0
votes
0
replies
5.9k
views
Comment: C: How to determine the surface markers in a gene list
6.0 years ago by rbronste ▴ 420
0
votes
2
replies
1.6k
views
Errors with samtools depth on merged bam file
bam samtools sam
updated 6.0 years ago by 5.9k • written 6.0 years ago by ▴ 420
1
vote
1
reply
1.3k
views
Read depth interval comparison
read depth BAM bed bedtools bedops
updated 6.0 years ago by 164k • written 6.0 years ago by ▴ 420
3
votes
2
replies
1.7k
views
Extending BED intervals
bed interval bedops bedtools
updated 6.0 years ago by 36k • written 6.0 years ago by ▴ 420
0
votes
1
reply
1.2k
views
Panther pathway gene list counts
panther pathway analysis gene ontology GO
updated 6.0 years ago by ▴ 180 • written 6.0 years ago by ▴ 420
0
votes
0
replies
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
6.0 years ago by rbronste ▴ 420
0
votes
0
replies
1.7k
views
Comment: C: Parsing AME tsv file
6.0 years ago by rbronste ▴ 420
0
votes
0
replies
1.7k
views
Comment: C: Parsing AME tsv file
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
1.7k
views
Comment: C: Parsing AME tsv file
6.0 years ago by rbronste ▴ 420
1
vote
1
reply
2.8k
views
Comment: C: Tool to predict Enhancer gene target
6.0 years ago by rbronste ▴ 420
0
votes
1
reply
16k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
6.0 years ago by rbronste ▴ 420
0
votes
2
replies
8.3k
views
Comment: C: Retrieving Phylop Scores Using R
6.1 years ago by rbronste ▴ 420
0
votes
1
reply
8.3k
views
Comment: C: Retrieving Phylop Scores Using R
6.1 years ago by rbronste ▴ 420
0
votes
1
reply
8.3k
views
Comment: C: Retrieving Phylop Scores Using R
6.1 years ago by rbronste ▴ 420
0
votes
1
reply
8.3k
views
Comment: C: Retrieving Phylop Scores Using R
6.1 years ago by rbronste ▴ 420
294 results • Page 2 of 6
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