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Comment: C: Adjusting for uneven Nextseq loading
6.7 years ago by rbronste ▴ 420
1
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3
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1.1k
views
Adjusting for uneven Nextseq loading
NextSeq fastq sequencing ChIP-Seq
updated 6.7 years ago by 7.0k • written 6.7 years ago by ▴ 420
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1
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1.1k
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Comment: C: Excluding intervals with repeats
6.7 years ago by rbronste ▴ 420
1
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3
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1.1k
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Excluding intervals with repeats
repeats BED masking
6.7 years ago by rbronste ▴ 420
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0
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1.1k
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Comment: C: Filter HT-Seq output for gene subclasses
6.8 years ago by rbronste ▴ 420
0
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2
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1.1k
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Filter HT-Seq output for gene subclasses
htseq RNA-Seq transcription factor
6.8 years ago by rbronste ▴ 420
4
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3
replies
1.8k
views
Extracting interval from fasta header
fasta header bed interval
updated 6.8 years ago by 36k • written 6.8 years ago by ▴ 420
3
votes
6
replies
3.3k
views
FIMO output to bed
fimo meme bedops bedtools
updated 6.9 years ago by ★ 2.1k • written 6.9 years ago by ▴ 420
0
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0
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3.3k
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Comment: C: FIMO output to bed
6.9 years ago by rbronste ▴ 420
0
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1
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7.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
6.9 years ago by rbronste ▴ 420
0
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1
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7.0k
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Comment: C: Table browser +/- 2Kb of TSS export
6.9 years ago by rbronste ▴ 420
0
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1
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1.5k
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Comment: C: Splitting .bed file by genomic location
6.9 years ago by rbronste ▴ 420
0
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0
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1.5k
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Comment: C: Splitting .bed file by genomic location
6.9 years ago by rbronste ▴ 420
1
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4
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1.5k
views
Splitting .bed file by genomic location
ChIP-Seq R BED promoter
6.9 years ago by rbronste ▴ 420
0
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1
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1.4k
views
FIMO outputs only Chr1 hits
fimo meme motif
updated 6.9 years ago by ★ 1.6k • written 6.9 years ago by ▴ 420
0
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1
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1.7k
views
De-novo motif discovery and repeats
motif meme fimo de novo
updated 6.9 years ago by 36k • written 6.9 years ago by ▴ 420
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0
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3.4k
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Comment: C: Subsetting DESeq2 results by padj quantity
6.9 years ago by rbronste ▴ 420
3
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5
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3.4k
views
Subsetting DESeq2 results by padj quantity
DESeq2 DESeq R
updated 6.9 years ago by ▴ 700 • written 6.9 years ago by ▴ 420
0
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1
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3.4k
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Comment: C: Subsetting DESeq2 results by padj quantity
6.9 years ago by rbronste ▴ 420
0
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2
replies
2.6k
views
HOMER target sequence location
HOMER ChIP-Seq motif
updated 7.0 years ago by ▴ 30 • written 7.7 years ago by ▴ 420
2
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5
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1.6k
views
Displaying/plotting numerous biological comparisons
plotting R
updated 7.0 years ago by 20 • written 7.1 years ago by ▴ 420
0
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2
replies
9.3k
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Comment: C: BagFoot TF foot printing
7.1 years ago by rbronste ▴ 420
0
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1
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3.3k
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Comment: C: tagAlign to BAM
7.1 years ago by rbronste ▴ 420
1
vote
3
replies
3.3k
views
tagAlign to BAM
ENCODE tagAlign bam
updated 7.1 years ago by 7.1k • written 7.1 years ago by ▴ 420
4
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9
replies
2.9k
views
Bed to BAM information transfer
ChIP-Seq sequencing BAM bed footprinting
updated 7.1 years ago by 20 • written 7.7 years ago by ▴ 420
0
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1
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1.6k
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Comment: C: Displaying/plotting numerous biological comparisons
7.1 years ago by rbronste ▴ 420
0
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1
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2.0k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
7.2 years ago by rbronste ▴ 420
0
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1
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2.0k
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Comment: C: Converting raw counts or DEseq2 output to TxDb container
7.2 years ago by rbronste ▴ 420
0
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1
reply
2.0k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
7.2 years ago by rbronste ▴ 420
0
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0
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2.0k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
7.2 years ago by rbronste ▴ 420
0
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1
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2.0k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
7.2 years ago by rbronste ▴ 420
2
votes
11
replies
2.0k
views
Converting raw counts or DEseq2 output to TxDb container
RNA-Seq R gene
updated 7.2 years ago by ▴ 370 • written 7.2 years ago by ▴ 420
0
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1
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3.1k
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Comment: C: ChIPseeker missing full annotation
7.2 years ago by rbronste ▴ 420
2
votes
3
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3.1k
views
ChIPseeker missing full annotation
ChIPSeeker ChIP-Seq KEGG GO
updated 7.2 years ago by ▴ 370 • written 7.2 years ago by ▴ 420
0
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1
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1.6k
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Comment: C: Eliminating repetetive motifs found by MEME
7.2 years ago by rbronste ▴ 420
2
votes
3
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1.6k
views
Eliminating repetetive motifs found by MEME
MEME motif ChIP-Seq
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 420
0
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1
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1.6k
views
MEME motif width
ChIP-Seq meme motif
7.2 years ago by rbronste ▴ 420
0
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0
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3.1k
views
Comment: C: Motif database of choice
7.2 years ago by rbronste ▴ 420
1
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1
reply
1.9k
views
Masking repeats in ATAC-seq data
ATAC-seq repeats DESeq
7.2 years ago by rbronste ▴ 420
0
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4
replies
1.9k
views
EP300 ChIP-seq in the brain
ChIP-Seq
updated 7.2 years ago by ▴ 10 • written 7.6 years ago by ▴ 420
0
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1
reply
2.8k
views
Comment: C: Comparing open chromatin data to ChromHMM model
7.3 years ago by rbronste ▴ 420
1
vote
3
replies
2.8k
views
Comparing open chromatin data to ChromHMM model
chromHMM ChIP-Seq ATAC-seq
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 420
0
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1
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2.1k
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Comment: C: Normalizing Illumina fastq read-lengths from different GEO datasets
7.3 years ago by rbronste ▴ 420
0
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1
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2.1k
views
Comment: C: Normalizing Illumina fastq read-lengths from different GEO datasets
7.3 years ago by rbronste ▴ 420
4
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5
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2.1k
views
Normalizing Illumina fastq read-lengths from different GEO datasets
GEO fastq RNA-Seq
7.3 years ago by rbronste ▴ 420
1
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0
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3.9k
views
Comment: C: any tools to get clean reads for illumina reads
7.3 years ago by rbronste ▴ 420
0
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0
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5.4k
views
Comment: C: samtools faidx error
7.3 years ago by rbronste ▴ 420
0
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1
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5.4k
views
Comment: C: samtools faidx error
7.3 years ago by rbronste ▴ 420
0
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1
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5.4k
views
Comment: C: samtools faidx error
7.3 years ago by rbronste ▴ 420
0
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1
reply
2.0k
views
Comment: C: Galaxy Bowtie2 fastq recognition
7.3 years ago by rbronste ▴ 420
294 results • Page 4 of 6
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