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514
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Comment: Comment: can someone please explain the DAPARS output?
3 months ago by PK ▴ 130
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1
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514
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Comment: Comment: can someone please explain the DAPARS output?
3 months ago by PK ▴ 130
2
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4
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514
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can someone please explain the DAPARS output?
RNA-seq APA DaPars2
3 months ago by PK ▴ 130
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0
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510
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Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
3 months ago by PK ▴ 130
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1
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510
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Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
3 months ago by PK ▴ 130
0
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1
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510
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Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
3 months ago by PK ▴ 130
1
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6
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510
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Is there any EnsEMBL 90 transcript annotations?
GTF cgat RNA-Seq
3 months ago by PK ▴ 130
0
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0
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264
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rMATS reports zero evenets?
splicing RNA-Seq rmats
7 months ago by PK ▴ 130
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0
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238
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How to calculate weighted transcript length for each gene?
salmon tximport rna-seq
updated 8 months ago by 44k • written 8 months ago by ▴ 130
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0
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445
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Comment: Comment: Error from cgat gtf2gtf --method=genes-to-unique-chunks
8 months ago by PK ▴ 130
2
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2
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445
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Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq GTF cgat
8 months ago by PK ▴ 130
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0
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341
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Comment: Comment: IntronicParts vs. intronsByTranscript
9 months ago by PK ▴ 130
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0
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961
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Comment: Comment: Featurecounts has more reads than star assigned reads ?
10 months ago by PK ▴ 130
4
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5
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961
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Featurecounts has more reads than star assigned reads ?
featurecounts STAR RNA-seq
10 months ago by PK ▴ 130
0
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0
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961
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Comment: Comment: Featurecounts has more reads than star assigned reads ?
10 months ago by PK ▴ 130
2
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1
reply
505
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How to normalize intron counts?
DESeq limma RNA-SEQ
updated 17 months ago by 10k • written 17 months ago by ▴ 130
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0
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1.5k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
17 months ago by PK ▴ 130
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1
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1.5k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
17 months ago by PK ▴ 130
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1
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1.5k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
17 months ago by PK ▴ 130
0
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1
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1.5k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
17 months ago by PK ▴ 130
1
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8
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1.5k
views
Is it possible to use salmon alevin tool for total rna seq samples?
salmon alignment
17 months ago by PK ▴ 130
1
vote
1
reply
527
views
weird behaviour on bedtools
bedtools RNA-Seq
updated 18 months ago by 44k • written 18 months ago by ▴ 130
1
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0
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600
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How to calculate Exon-Intron junction perbase coverage?
RNA-Seq bedtools
20 months ago by PK ▴ 130
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0
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414
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Reference book for clip seq analysis?
RNASEQ clipseq R
20 months ago by PK ▴ 130
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0
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799
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Comment: Comment: Strand-specific in HT-Seq
22 months ago by PK ▴ 130
0
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0
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425
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How to normalize the counts when you are looking at 3'UTR?
bedtools RNA-Seq
updated 17 months ago by 44k • written 22 months ago by ▴ 130
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0
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860
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Comment: Comment: Metagene for first last and intermediate exons?
23 months ago by PK ▴ 130
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2
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860
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Metagene for first last and intermediate exons?
ggplot Rna-seq deeptools r
updated 17 months ago by 44k • written 23 months ago by ▴ 130
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1
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1.1k
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how to create a metagene plot for different features of genes?
metagene RNA-Seq deeptools R
updated 23 months ago by 11k • written 23 months ago by ▴ 130
0
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1
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766
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Comment: Comment: How to plot that the certain exons are affected in the genebody?
24 months ago by PK ▴ 130
3
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3
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766
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How to plot that the certain exons are affected in the genebody?
RNA-seq
updated 23 months ago by 44k • written 24 months ago by ▴ 130
1
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1
reply
551
views
How to handle multiple overlap and choose closest one?
RNA-Seq bedtools
updated 24 months ago by 164k • written 24 months ago by ▴ 130
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0
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1.6k
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Comment: Comment: DEXSeq unable to find an inherited method for function ‘NSBS’ for signature ‘"C
2.0 years ago by PK ▴ 130
0
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0
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2.2k
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Comment: Comment: Counting gene vs exons in featureCounts
2.0 years ago by PK ▴ 130
0
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0
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3.4k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
0
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1
reply
3.4k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
0
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1
reply
3.4k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
0
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0
replies
3.4k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
0
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1
reply
3.4k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
0
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1
reply
3.4k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
5
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16
replies
3.4k
views
How to extract intron counts from total RNA Sequencing?
featurecounts RNAseq htseq STAR
2.0 years ago by PK ▴ 130
0
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1
reply
3.4k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by PK ▴ 130
0
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0
replies
1.8k
views
Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.1 years ago by PK ▴ 130
0
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1
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1.8k
views
Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.1 years ago by PK ▴ 130
0
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1
reply
1.8k
views
Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.1 years ago by PK ▴ 130
4
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7
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1.8k
views
What is the advantage of mapping RNA-Seq against genome?
RNA-SEQ mapping
2.1 years ago by PK ▴ 130
0
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0
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448
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can i use repeat masker gff file to directly extract the counts from fastq files?
repeat base masker rep
2.1 years ago by PK ▴ 130
0
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0
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428
views
How to generate gene body coverage plot for tRNA?
clipseq peak-calling RNA-seq samtools
updated 17 months ago by 44k • written 2.3 years ago by ▴ 130
0
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0
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958
views
Comment: Comment: What is the maximum size of fasta file i can use for repeatmasker?
2.4 years ago by PK ▴ 130
0
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1
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958
views
Comment: Comment: What is the maximum size of fasta file i can use for repeatmasker?
2.4 years ago by PK ▴ 130
147 results • Page 1 of 3
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