Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
602
views
Comment: Comment: is there any way to normalize the counts and compare it for the splicing quantif
4 months ago by PK ▴ 130
2
votes
2
replies
602
views
is there any way to normalize the counts and compare it for the splicing quantification?
majiq splicing rmats
4 months ago by PK ▴ 130
0
votes
0
replies
986
views
Comment: Comment: can someone please explain the DAPARS output?
9 months ago by PK ▴ 130
0
votes
1
reply
986
views
Comment: Comment: can someone please explain the DAPARS output?
9 months ago by PK ▴ 130
2
votes
4
replies
986
views
can someone please explain the DAPARS output?
RNA-seq APA DaPars2
9 months ago by PK ▴ 130
0
votes
0
replies
930
views
Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
10 months ago by PK ▴ 130
0
votes
1
reply
930
views
Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
10 months ago by PK ▴ 130
0
votes
1
reply
930
views
Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
10 months ago by PK ▴ 130
1
vote
6
replies
930
views
Is there any EnsEMBL 90 transcript annotations?
GTF cgat RNA-Seq
10 months ago by PK ▴ 130
0
votes
0
replies
396
views
rMATS reports zero evenets?
splicing RNA-Seq rmats
14 months ago by PK ▴ 130
0
votes
0
replies
333
views
How to calculate weighted transcript length for each gene?
salmon tximport rna-seq
updated 14 months ago by 45k • written 14 months ago by ▴ 130
0
votes
0
replies
778
views
Comment: Comment: Error from cgat gtf2gtf --method=genes-to-unique-chunks
15 months ago by PK ▴ 130
2
votes
2
replies
778
views
Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq GTF cgat
15 months ago by PK ▴ 130
0
votes
0
replies
505
views
Comment: Comment: IntronicParts vs. intronsByTranscript
16 months ago by PK ▴ 130
0
votes
0
replies
1.5k
views
Comment: Comment: Featurecounts has more reads than star assigned reads ?
17 months ago by PK ▴ 130
4
votes
5
replies
1.5k
views
Featurecounts has more reads than star assigned reads ?
featurecounts STAR RNA-seq
17 months ago by PK ▴ 130
0
votes
0
replies
1.5k
views
Comment: Comment: Featurecounts has more reads than star assigned reads ?
17 months ago by PK ▴ 130
2
votes
1
reply
696
views
How to normalize intron counts?
DESeq limma RNA-SEQ
updated 24 months ago by 10k • written 24 months ago by ▴ 130
0
votes
0
replies
2.0k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
24 months ago by PK ▴ 130
0
votes
1
reply
2.0k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
24 months ago by PK ▴ 130
0
votes
1
reply
2.0k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
24 months ago by PK ▴ 130
0
votes
1
reply
2.0k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
24 months ago by PK ▴ 130
1
vote
8
replies
2.0k
views
Is it possible to use salmon alevin tool for total rna seq samples?
salmon alignment
24 months ago by PK ▴ 130
1
vote
1
reply
705
views
weird behaviour on bedtools
bedtools RNA-Seq
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 130
1
vote
0
replies
744
views
How to calculate Exon-Intron junction perbase coverage?
RNA-Seq bedtools
2.2 years ago by PK ▴ 130
0
votes
0
replies
479
views
Reference book for clip seq analysis?
RNASEQ clipseq R
2.3 years ago by PK ▴ 130
0
votes
0
replies
989
views
Comment: Comment: Strand-specific in HT-Seq
2.4 years ago by PK ▴ 130
0
votes
0
replies
492
views
How to normalize the counts when you are looking at 3'UTR?
bedtools RNA-Seq
updated 24 months ago by 45k • written 2.4 years ago by ▴ 130
0
votes
0
replies
1.0k
views
Comment: Comment: Metagene for first last and intermediate exons?
2.5 years ago by PK ▴ 130
0
votes
2
replies
1.0k
views
Metagene for first last and intermediate exons?
ggplot Rna-seq deeptools r
updated 24 months ago by 45k • written 2.5 years ago by ▴ 130
0
votes
1
reply
1.4k
views
how to create a metagene plot for different features of genes?
metagene RNA-Seq deeptools R
updated 2.5 years ago by 11k • written 2.5 years ago by ▴ 130
0
votes
1
reply
959
views
Comment: Comment: How to plot that the certain exons are affected in the genebody?
2.5 years ago by PK ▴ 130
3
votes
3
replies
959
views
How to plot that the certain exons are affected in the genebody?
RNA-seq
updated 2.5 years ago by 45k • written 2.5 years ago by ▴ 130
1
vote
1
reply
681
views
How to handle multiple overlap and choose closest one?
RNA-Seq bedtools
updated 2.6 years ago by 166k • written 2.6 years ago by ▴ 130
0
votes
0
replies
1.9k
views
Comment: Comment: DEXSeq unable to find an inherited method for function ‘NSBS’ for signature ‘"C
2.6 years ago by PK ▴ 130
0
votes
0
replies
2.6k
views
Comment: Comment: Counting gene vs exons in featureCounts
2.6 years ago by PK ▴ 130
0
votes
0
replies
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
0
votes
0
replies
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
5
votes
16
replies
4.3k
views
How to extract intron counts from total RNA Sequencing?
featurecounts RNAseq htseq STAR
2.6 years ago by PK ▴ 130
0
votes
1
reply
4.3k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.6 years ago by PK ▴ 130
0
votes
0
replies
2.2k
views
Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.6 years ago by PK ▴ 130
0
votes
1
reply
2.2k
views
Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.6 years ago by PK ▴ 130
0
votes
1
reply
2.2k
views
Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.6 years ago by PK ▴ 130
4
votes
7
replies
2.2k
views
What is the advantage of mapping RNA-Seq against genome?
RNA-SEQ mapping
2.6 years ago by PK ▴ 130
0
votes
0
replies
569
views
can i use repeat masker gff file to directly extract the counts from fastq files?
repeat base masker rep
2.7 years ago by PK ▴ 130
0
votes
0
replies
533
views
How to generate gene body coverage plot for tRNA?
clipseq peak-calling RNA-seq samtools
updated 24 months ago by 45k • written 2.9 years ago by ▴ 130
149 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6