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296
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Comment: Comment: is there any way to normalize the counts and compare it for the splicing quantif
15 days ago by PK ▴ 130
2
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2
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296
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is there any way to normalize the counts and compare it for the splicing quantification?
majiq splicing rmats
15 days ago by PK ▴ 130
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0
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726
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Comment: Comment: can someone please explain the DAPARS output?
5 months ago by PK ▴ 130
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1
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726
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Comment: Comment: can someone please explain the DAPARS output?
5 months ago by PK ▴ 130
2
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4
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726
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can someone please explain the DAPARS output?
RNA-seq APA DaPars2
5 months ago by PK ▴ 130
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0
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711
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Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
6 months ago by PK ▴ 130
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1
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711
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Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
6 months ago by PK ▴ 130
0
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1
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711
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Comment: Comment: Is there any EnsEMBL 90 transcript annotations?
6 months ago by PK ▴ 130
1
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6
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711
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Is there any EnsEMBL 90 transcript annotations?
GTF cgat RNA-Seq
6 months ago by PK ▴ 130
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0
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318
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rMATS reports zero evenets?
splicing RNA-Seq rmats
10 months ago by PK ▴ 130
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0
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278
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How to calculate weighted transcript length for each gene?
salmon tximport rna-seq
updated 10 months ago by 44k • written 10 months ago by ▴ 130
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0
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551
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Comment: Comment: Error from cgat gtf2gtf --method=genes-to-unique-chunks
11 months ago by PK ▴ 130
2
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2
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551
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Error from cgat gtf2gtf --method=genes-to-unique-chunks
RNA-Seq GTF cgat
11 months ago by PK ▴ 130
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0
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408
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Comment: Comment: IntronicParts vs. intronsByTranscript
12 months ago by PK ▴ 130
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0
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1.2k
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Comment: Comment: Featurecounts has more reads than star assigned reads ?
13 months ago by PK ▴ 130
4
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5
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1.2k
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Featurecounts has more reads than star assigned reads ?
featurecounts STAR RNA-seq
13 months ago by PK ▴ 130
0
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0
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1.2k
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Comment: Comment: Featurecounts has more reads than star assigned reads ?
13 months ago by PK ▴ 130
2
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1
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574
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How to normalize intron counts?
DESeq limma RNA-SEQ
updated 20 months ago by 10k • written 20 months ago by ▴ 130
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0
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1.7k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
20 months ago by PK ▴ 130
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1
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1.7k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
20 months ago by PK ▴ 130
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1
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1.7k
views
Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
20 months ago by PK ▴ 130
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1
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1.7k
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Comment: Comment: Is it possible to use salmon alevin tool for total rna seq samples?
20 months ago by PK ▴ 130
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8
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1.7k
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Is it possible to use salmon alevin tool for total rna seq samples?
salmon alignment
20 months ago by PK ▴ 130
1
vote
1
reply
621
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weird behaviour on bedtools
bedtools RNA-Seq
updated 20 months ago by 44k • written 21 months ago by ▴ 130
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0
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661
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How to calculate Exon-Intron junction perbase coverage?
RNA-Seq bedtools
23 months ago by PK ▴ 130
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0
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435
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Reference book for clip seq analysis?
RNASEQ clipseq R
23 months ago by PK ▴ 130
0
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0
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889
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Comment: Comment: Strand-specific in HT-Seq
2.0 years ago by PK ▴ 130
0
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0
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450
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How to normalize the counts when you are looking at 3'UTR?
bedtools RNA-Seq
updated 20 months ago by 44k • written 2.0 years ago by ▴ 130
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0
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941
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Comment: Comment: Metagene for first last and intermediate exons?
2.1 years ago by PK ▴ 130
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2
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941
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Metagene for first last and intermediate exons?
ggplot Rna-seq deeptools r
updated 20 months ago by 44k • written 2.1 years ago by ▴ 130
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1
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1.2k
views
how to create a metagene plot for different features of genes?
metagene RNA-Seq deeptools R
updated 2.2 years ago by 11k • written 2.2 years ago by ▴ 130
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1
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835
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Comment: Comment: How to plot that the certain exons are affected in the genebody?
2.2 years ago by PK ▴ 130
3
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3
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835
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How to plot that the certain exons are affected in the genebody?
RNA-seq
updated 2.2 years ago by 44k • written 2.2 years ago by ▴ 130
1
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1
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597
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How to handle multiple overlap and choose closest one?
RNA-Seq bedtools
updated 2.2 years ago by 165k • written 2.2 years ago by ▴ 130
0
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0
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1.7k
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Comment: Comment: DEXSeq unable to find an inherited method for function ‘NSBS’ for signature ‘"C
2.3 years ago by PK ▴ 130
0
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0
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2.4k
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Comment: Comment: Counting gene vs exons in featureCounts
2.3 years ago by PK ▴ 130
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0
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3.8k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
0
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1
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3.8k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
0
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1
reply
3.8k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
0
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0
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3.8k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
0
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1
reply
3.8k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
0
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1
reply
3.8k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
5
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16
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3.8k
views
How to extract intron counts from total RNA Sequencing?
featurecounts RNAseq htseq STAR
2.3 years ago by PK ▴ 130
0
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1
reply
3.8k
views
Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.3 years ago by PK ▴ 130
0
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0
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2.0k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.3 years ago by PK ▴ 130
0
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1
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2.0k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.3 years ago by PK ▴ 130
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1
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2.0k
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Comment: Comment: What is the advantage of mapping RNA-Seq against genome?
2.3 years ago by PK ▴ 130
4
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7
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2.0k
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What is the advantage of mapping RNA-Seq against genome?
RNA-SEQ mapping
2.3 years ago by PK ▴ 130
0
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0
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491
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can i use repeat masker gff file to directly extract the counts from fastq files?
repeat base masker rep
2.4 years ago by PK ▴ 130
0
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0
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473
views
How to generate gene body coverage plot for tRNA?
clipseq peak-calling RNA-seq samtools
updated 20 months ago by 44k • written 2.5 years ago by ▴ 130
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