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4
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0
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22k
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Answer: A: using python for pairwise alignment
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 2.5k
0
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0
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3.8k
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Answer: A: How to account for missing residues when docking small molecule ligands into a P
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 2.5k
0
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1
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1.9k
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Answer: A: Rotamers state in protein design
updated 5.2 years ago by 45k • written 10.8 years ago by ★ 2.5k
7
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1
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3.5k
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Answer: A: protein 3-D structure prediction
updated 5.2 years ago by 45k • written 10.9 years ago by ★ 2.5k
1
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1
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2.6k
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Answer: A: Automatically Recognize Which Chains Are From Protein And Which Chains From Liga
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 2.5k
2
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0
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3.6k
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Answer: A: PDB FILE, homology modelling
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 2.5k
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0
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2.0k
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Answer: A: downloading pdbids and chains of heterodimers
updated 5.3 years ago by 45k • written 11.0 years ago by ★ 2.5k
0
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0
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16k
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Comment: C: How To Make Multiple Fasta-->Pdb Conversions For Short Peptides (4 Or 5 Aminoaci
updated 5.5 years ago by 45k • written 13.1 years ago by ★ 2.5k
2
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0
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7.6k
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Answer: A: merge pdb chains
8.5 years ago by João Rodrigues ★ 2.5k
0
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0
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7.2k
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Answer: A: mutation using PyMOL
8.6 years ago by João Rodrigues ★ 2.5k
1
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0
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1.8k
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Comment: C: Protein modelling with modeller
8.6 years ago by João Rodrigues ★ 2.5k
2
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0
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2.1k
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Answer: A: Which programs generate good images of structural biology models or molecular dy
8.6 years ago by João Rodrigues ★ 2.5k
0
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0
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1.7k
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Answer: A: Homology modelling template
8.8 years ago by João Rodrigues ★ 2.5k
1
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0
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1.6k
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Answer: A: Is there any correlation between molecule sizes and their interaction energy aft
8.8 years ago by João Rodrigues ★ 2.5k
3
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1
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4.7k
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Answer: A: aligning a bound ligand from one PDB complex to a reference structure
8.8 years ago by João Rodrigues ★ 2.5k
0
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0
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5.4k
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Answer: Answer: Cartesian to internal coordinates (z-matrix representation)
updated 2.2 years ago by 45k • written 9.8 years ago by ★ 2.5k
2
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0
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4.5k
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Answer: Answer: Beginner pymol user
updated 2.1 years ago by 45k • written 9.9 years ago by ★ 2.5k
0
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0
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2.7k
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Comment: Comment: Missing segments of protein and minimization
updated 2.1 years ago by 45k • written 9.9 years ago by ★ 2.5k
1
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0
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2.7k
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Answer: Answer: Missing segments of protein and minimization
updated 2.7 years ago by 45k • written 9.9 years ago by ★ 2.5k
0
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0
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3.1k
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Comment: C: Protein RNA docking
9.9 years ago by João Rodrigues ★ 2.5k
1
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1
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3.1k
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Answer: Answer: Protein RNA docking
updated 2.7 years ago by 45k • written 9.9 years ago by ★ 2.5k
0
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0
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4.8k
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Comment: C: Struggle to loop over multiple files with BioPython
10.0 years ago by João Rodrigues ★ 2.5k
0
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0
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4.8k
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Answer: Answer: Struggle to loop over multiple files with BioPython
updated 2.8 years ago by 45k • written 10.0 years ago by ★ 2.5k
1
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0
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3.6k
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Comment: C: rna-pdb-tools - idea of Python library with utils (small linux-cmd-like programs
10.0 years ago by João Rodrigues ★ 2.5k
4
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1
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3.7k
views
Answer: Answer: Any free tool for Calculating Gasteiger-Hückel charges for ligands?
updated 2.8 years ago by 45k • written 10.0 years ago by ★ 2.5k
0
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0
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3.9k
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Comment: Comment: Ligand minimization Using prodrg
updated 2.8 years ago by 45k • written 10.0 years ago by ★ 2.5k
2
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1
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3.9k
views
Answer: Answer: Ligand minimization Using prodrg
updated 2.8 years ago by 45k • written 10.0 years ago by ★ 2.5k
0
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0
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6.9k
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Comment: C: pdb-tools: a set of Python scripts to manipulate PDB files.
10.0 years ago by João Rodrigues ★ 2.5k
1
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0
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3.6k
views
Comment: C: rna-pdb-tools - idea of Python library with utils (small linux-cmd-like programs
10.0 years ago by João Rodrigues ★ 2.5k
4
votes
2
replies
6.9k
views
Tool: pdb-tools: a set of Python scripts to manipulate PDB files.
python pdb modeling
updated 2.8 years ago by 45k • written 10.0 years ago by ★ 2.5k
0
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0
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3.5k
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Comment: C: RMSD in membrane protein simulation
10.0 years ago by João Rodrigues ★ 2.5k
0
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1
reply
3.5k
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Comment: C: RMSD in membrane protein simulation
10.0 years ago by João Rodrigues ★ 2.5k
0
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0
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3.5k
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Comment: C: RMSD in membrane protein simulation
10.0 years ago by João Rodrigues ★ 2.5k
1
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0
replies
3.5k
views
Answer: A: RMSD in membrane protein simulation
10.0 years ago by João Rodrigues ★ 2.5k
3
votes
0
replies
5.1k
views
Answer: A: How extract coordinates of surface atoms of a protein from a pdb file?
10.0 years ago by João Rodrigues ★ 2.5k
1
vote
1
reply
2.6k
views
Comment: C: BioPython: Residues size differ from position
10.0 years ago by João Rodrigues ★ 2.5k
1
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1
reply
2.6k
views
Answer: Answer: BioPython: Residues size differ from position
updated 2.4 years ago by 45k • written 10.0 years ago by ★ 2.5k
0
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0
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3.3k
views
Comment: Comment: HADDOCK error: TOTAL NUMBER OF DISTANCE RESTRAINTS FOR RIGID BODY DOCKING IS ZER
updated 2.8 years ago by 45k • written 10.0 years ago by ★ 2.5k
0
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1
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3.3k
views
Comment: Comment: HADDOCK error: TOTAL NUMBER OF DISTANCE RESTRAINTS FOR RIGID BODY DOCKING IS ZER
10.0 years ago by João Rodrigues ★ 2.5k
0
votes
1
reply
14k
views
Comment: Comment: running modeller through python scripts
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.5k
0
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0
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5.6k
views
Comment: C: Use of Segments in PDB Files
10.2 years ago by João Rodrigues ★ 2.5k
3
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2
replies
14k
views
Answer: A: running modeller through python scripts
10.2 years ago by João Rodrigues ★ 2.5k
0
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0
replies
5.6k
views
Comment: C: Use of Segments in PDB Files
10.2 years ago by João Rodrigues ★ 2.5k
1
vote
0
replies
21k
views
Answer: Answer: Renumbering Residues in PyMOL
updated 3.0 years ago by 45k • written 10.2 years ago by ★ 2.5k
1
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0
replies
2.4k
views
Answer: A: Micro RNA docking
10.3 years ago by João Rodrigues ★ 2.5k
0
votes
1
reply
3.6k
views
Comment: C: Energy minimization for protein model refinement
10.3 years ago by João Rodrigues ★ 2.5k
2
votes
1
reply
3.6k
views
Answer: Answer: Energy minimization for protein model refinement
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.5k
3
votes
0
replies
6.0k
views
Answer: Answer: which are the best docking softwares available?
updated 3.2 years ago by 45k • written 10.5 years ago by ★ 2.5k
1
vote
1
reply
3.2k
views
Answer: A: Setting up an alert for new human PDB ligands
10.5 years ago by João Rodrigues ★ 2.5k
1
vote
0
replies
1.9k
views
Answer: A: similarity of 3D and sequential structure of protein in three bacteria?
10.5 years ago by João Rodrigues ★ 2.5k
230 results • Page 1 of 5
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