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Comment: C: Is there a list of E. coli genes whose promoters use sigma factor 70 (sigma70)?
6.9 years ago by jespinoz ▴ 20
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Is there a list of E. coli genes whose promoters use sigma factor 70 (sigma70)?
transcription sigma genomics e.coli RNA-Seq
updated 20 months ago by 44k • written 6.9 years ago by ▴ 20
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What Blosum matrix to use for ortholog table?
genome phylogeny ortholog blosum
6.9 years ago by jespinoz ▴ 20
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Comment: C: How to build HMM from position weight matrix?
6.9 years ago by jespinoz ▴ 20
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How to build HMM from position weight matrix?
meme motif hmm pwm
7.0 years ago by jespinoz ▴ 20
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Cannot merge BCF files with `bcftools` files because "Index required, expected .vcf.gz or .bcf file" ?
bcf vcf merge index snps
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 20
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Comment: C: How to fill in missing fields on a VCF to convert into a genotype matrix?
7.5 years ago by jespinoz ▴ 20
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2.5k
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How to fill in missing fields on a VCF to convert into a genotype matrix?
vcf genotype matrix bcf snps
7.5 years ago by jespinoz ▴ 20
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5
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5.5k
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How to convert vcf file into data matrix for machine-learning?
vcf bcf vcftools genotype machine-learning
7.5 years ago by jespinoz ▴ 20
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Comment: C: GT and GL fields in VCF file
7.5 years ago by jespinoz ▴ 20
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5.5k
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Comment: C: How to convert vcf file into data matrix for machine-learning?
7.5 years ago by jespinoz ▴ 20
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4.5k
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Comment: C: remove private alleles from a vcf file
7.5 years ago by jespinoz ▴ 20
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5.5k
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Comment: C: How to convert vcf file into data matrix for machine-learning?
7.5 years ago by jespinoz ▴ 20
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1
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59k
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Comment: C: How to extract specific chromosome from vcf file
7.5 years ago by jespinoz ▴ 20
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4.2k
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Answer: A: Cannot merge BCF files with `bcftools` files because "Index required, expected .
7.5 years ago by jespinoz ▴ 20
2
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1
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23k
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Comment: C: vcf not indexing
7.5 years ago by jespinoz ▴ 20
6
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9
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3.9k
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How to filter huge VCF files for datamining?
vcf bcf genome genotype snps
7.5 years ago by jespinoz ▴ 20
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0
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3.9k
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Comment: C: How to filter huge VCF files for datamining?
7.5 years ago by jespinoz ▴ 20
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1
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3.9k
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Comment: C: How to filter huge VCF files for datamining?
7.5 years ago by jespinoz ▴ 20
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0
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3.9k
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Comment: C: How to filter huge VCF files for datamining?
7.5 years ago by jespinoz ▴ 20
0
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0
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3.9k
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Comment: C: How to filter huge VCF files for datamining?
7.5 years ago by jespinoz ▴ 20
0
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1
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3.2k
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How to get VCF file into a data matrix form for machine-learning? (new to vcf files)
vcf machine-learning genotype snps
7.6 years ago by jespinoz ▴ 20
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