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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
6 weeks ago by jkim ▴ 190
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1.6k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
7 weeks ago by jkim ▴ 190
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1
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483
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Comment: Comment: RNA seq data for normal samples
3 months ago by jkim ▴ 190
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616
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Comment: Comment: PCA plot
7 months ago by jkim ▴ 190
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1.1k
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Comment: Comment: PCA plot (Suggestions Needed)
7 months ago by jkim ▴ 190
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575
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Comment: Comment: Error during demultiplexing by bcl2fastq
7 months ago by jkim ▴ 190
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1.0k
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Comment: Comment: 99.9999% of Q30 bases is normal?
7 months ago by jkim ▴ 190
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1.0k
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Comment: Comment: 99.9999% of Q30 bases is normal?
7 months ago by jkim ▴ 190
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0
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778
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Comment: Comment: create a gene count matrix csv file from seurat object
7 months ago by jkim ▴ 190
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1
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778
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Comment: Comment: create a gene count matrix csv file from seurat object
7 months ago by jkim ▴ 190
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1
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778
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Comment: Comment: create a gene count matrix csv file from seurat object
7 months ago by jkim ▴ 190
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6
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778
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create a gene count matrix csv file from seurat object
Seurat sparseMatrix
7 months ago by jkim ▴ 190
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917
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
10 months ago by jkim ▴ 190
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1
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1.7k
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Comment: Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
11 months ago by jkim ▴ 190
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0
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312
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% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
11 months ago by jkim ▴ 190
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0
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2.0k
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Comment: Comment: Nextflow bwa-mem2 pipeline/channel question
12 months ago by jkim ▴ 190
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2
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1.8k
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Comment: Comment: Mentor for a beginner bioinformatics student
13 months ago by jkim ▴ 190
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1.1k
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Comment: Comment: Merge fastq files across different lanes in Nextflow
13 months ago by jkim ▴ 190
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3
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1.1k
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Merge fastq files across different lanes in Nextflow
Nextflow Fastq
13 months ago by jkim ▴ 190
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0
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1.1k
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Answer: Answer: Merge fastq files across different lanes in Nextflow
13 months ago by jkim ▴ 190
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0
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1.7k
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Comment: Comment: STAR index not working
14 months ago by jkim ▴ 190
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1
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775
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
14 months ago by jkim ▴ 190
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3
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775
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Batch effect consideration (re-seq the same sample twice)
RNA-seq batch-effect
updated 14 months ago by 44k • written 14 months ago by ▴ 190
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1.1k
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Comment: Comment: One sample has quite different # of reads from different lanes.
15 months ago by jkim ▴ 190
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1
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1.1k
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Comment: Comment: One sample has quite different # of reads from different lanes.
15 months ago by jkim ▴ 190
4
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4
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1.1k
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One sample has quite different # of reads from different lanes.
demultiplexing illumina fastq
15 months ago by jkim ▴ 190
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1.4k
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Comment: Comment: Double biological replication when using DESeq2
16 months ago by jkim ▴ 190
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0
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943
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Comment: Comment: How to interpret RNAseq output?
16 months ago by jkim ▴ 190
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769
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Comment: Comment: mRNA library preparation Adapter ligation
18 months ago by jkim ▴ 190
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0
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1.4k
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Comment: Comment: How to trim reads for Chip Seq analysis
18 months ago by jkim ▴ 190
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0
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767
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Answer: Answer: What is the best aligner for stranded RNASeq
18 months ago by jkim ▴ 190
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1
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2.2k
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Comment: Comment: trimmomatic on scRNA seq data
18 months ago by jkim ▴ 190
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0
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2.1k
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Comment: Comment: Comparing two RNA-Seq datasets
2.2 years ago by jkim ▴ 190
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1
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2.1k
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Answer: Answer: Comparing two RNA-Seq datasets
2.2 years ago by jkim ▴ 190
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1
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1.0k
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Comment: Comment: DE analysis with multiple factors
2.2 years ago by jkim ▴ 190
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1
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1.6k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
2.2 years ago by jkim ▴ 190
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1
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1.6k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
2.2 years ago by jkim ▴ 190
3
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5
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1.6k
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Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 2.2 years ago by 22k • written 2.2 years ago by ▴ 190
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2.2k
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Comment: Comment: Read coverage shows a difference in IGV
2.2 years ago by jkim ▴ 190
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0
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2.2k
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Comment: Comment: Read coverage shows a difference in IGV
2.2 years ago by jkim ▴ 190
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0
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2.2k
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Comment: Comment: Read coverage shows a difference in IGV
2.2 years ago by jkim ▴ 190
0
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0
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2.2k
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Comment: Comment: Read coverage shows a difference in IGV
2.2 years ago by jkim ▴ 190
3
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7
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2.2k
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Read coverage shows a difference in IGV
coverage BAM
2.2 years ago by jkim ▴ 190
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0
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6.1k
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Comment: Comment: Is there a limit for SAMTOOLS tview option?
2.2 years ago by jkim ▴ 190
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0
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1.7k
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Comment: Comment: Filter out reads with hidden tags in bam files
2.3 years ago by jkim ▴ 190
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0
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1.7k
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Comment: Comment: Filter out reads with hidden tags in bam files
2.3 years ago by jkim ▴ 190
0
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0
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1.7k
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Comment: Comment: Filter out reads with hidden tags in bam files
2.3 years ago by jkim ▴ 190
4
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7
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1.7k
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Filter out reads with hidden tags in bam files
BAM samtools
2.3 years ago by jkim ▴ 190
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1
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1.7k
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Answer: Answer: Filter out reads with hidden tags in bam files
2.3 years ago by jkim ▴ 190
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0
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1.1k
views
Answer: Answer: Counts from STAR with stranded protocol
2.5 years ago by jkim ▴ 190
73 results • Page 1 of 2
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