Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
816
views
Remove certain species from standard database of Kraken
RNA-Seq 16s kraken bracken metagenomics
updated 4.3 years ago by 20 • written 4.3 years ago by ▴ 70
7
votes
2
replies
17k
views
samtools stats result different from samtools flagstat
samtools
updated 4.5 years ago by ▴ 20 • written 5.9 years ago by ▴ 70
1
vote
0
replies
1.3k
views
splicing with UMI barcodes - paired end illumina sequencing
STAR UMI UMItools Illumina splicing
4.7 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.3k
views
Comment: C: STAR extract reads supporting junction from bam file
5.0 years ago by snishtala03 ▴ 70
0
votes
2
replies
1.3k
views
STAR extract reads supporting junction from bam file
RNA-Seq STAR splicing
5.0 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.3k
views
Comment: C: Significance of column 'strand' and 'max splice overhang' in STAR output
5.1 years ago by snishtala03 ▴ 70
0
votes
2
replies
1.3k
views
Significance of column 'strand' and 'max splice overhang' in STAR output
RNA-Seq STAR splicing
updated 5.1 years ago by 44k • written 5.1 years ago by ▴ 70
0
votes
1
reply
1.1k
views
Comment: C: single contig de novo assembly
5.3 years ago by snishtala03 ▴ 70
1
vote
4
replies
1.1k
views
single contig de novo assembly
RNA-Seq de-novo assembly contig
5.3 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.3k
views
Comment: C: Splicing in virus using long read sequencing
5.4 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.3k
views
Comment: C: Splicing in virus using long read sequencing
5.6 years ago by snishtala03 ▴ 70
0
votes
1
reply
1.3k
views
Comment: C: Splicing in virus using long read sequencing
5.6 years ago by snishtala03 ▴ 70
0
votes
5
replies
1.3k
views
Splicing in virus using long read sequencing
pacbio minimap2 splicing long read sequencing
5.6 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.5k
views
primers for PacBio lima software
pacbio lima primer isoseq clontech
5.7 years ago by snishtala03 ▴ 70
0
votes
0
replies
2.0k
views
Comment: C: count reads mapped to multiple locations only once
5.9 years ago by snishtala03 ▴ 70
1
vote
3
replies
2.0k
views
count reads mapped to multiple locations only once
bwa alignment samtools multiple mapping
5.9 years ago by snishtala03 ▴ 70
4
votes
0
replies
17k
views
Answer: A: samtools stats result different from samtools flagstat
5.9 years ago by snishtala03 ▴ 70
0
votes
1
reply
3.7k
views
Comment: C: bbmerge merged read smaller that original reads
5.9 years ago by snishtala03 ▴ 70
1
vote
3
replies
3.7k
views
bbmerge merged read smaller that original reads
bbmerge fastq alignment flash vsearch
updated 5.9 years ago by 44k • written 5.9 years ago by ▴ 70
0
votes
1
reply
36k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
5.9 years ago by snishtala03 ▴ 70
0
votes
1
reply
36k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
5.9 years ago by snishtala03 ▴ 70
0
votes
1
reply
36k
views
Comment: A: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
5.9 years ago by snishtala03 ▴ 70
0
votes
1
reply
36k
views
Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
5.9 years ago by snishtala03 ▴ 70
0
votes
0
replies
8.9k
views
Comment: C: SAM flag and select reads that map uniquely
5.9 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.5k
views
Comment: C: Get read start site using bedtools from bam file after merging paired end data
5.9 years ago by snishtala03 ▴ 70
0
votes
1
reply
1.5k
views
Comment: C: Get read start site using bedtools from bam file after merging paired end data
5.9 years ago by snishtala03 ▴ 70
0
votes
3
replies
1.5k
views
Get read start site using bedtools from bam file after merging paired end data
RNA-Seq bbmerge bedtools samtools alignment
5.9 years ago by snishtala03 ▴ 70
0
votes
0
replies
1.3k
views
read simulation and quantification
RNA-Seq simulation quantification fasta
7.4 years ago by snishtala03 ▴ 70
2
votes
6
replies
6.8k
views
GAGE or GSEABase using expression data and pathway.gmt file for mouse
RNA-Seq R GAGE GSEA Pathway
updated 7.7 years ago by ▴ 440 • written 7.8 years ago by ▴ 70
0
votes
0
replies
6.8k
views
Comment: C: GAGE or GSEABase using expression data and pathway.gmt file for mouse
7.8 years ago by snishtala03 ▴ 70
0
votes
0
replies
6.4k
views
Comment: C: How to convert UCSC transcript(isforms) ids to Ensemble transcript ids?
8.0 years ago by snishtala03 ▴ 70
31 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6