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0
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858
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Remove certain species from standard database of Kraken
RNA-Seq 16s kraken bracken metagenomics
updated 4.6 years ago by 20 • written 4.6 years ago by ▴ 70
7
votes
2
replies
18k
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samtools stats result different from samtools flagstat
samtools
updated 4.9 years ago by ▴ 20 • written 6.2 years ago by ▴ 70
1
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0
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1.4k
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splicing with UMI barcodes - paired end illumina sequencing
STAR UMI UMItools Illumina splicing
5.1 years ago by snishtala03 ▴ 70
0
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0
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1.4k
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Comment: C: STAR extract reads supporting junction from bam file
5.4 years ago by snishtala03 ▴ 70
0
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2
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1.4k
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STAR extract reads supporting junction from bam file
RNA-Seq STAR splicing
5.4 years ago by snishtala03 ▴ 70
0
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0
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1.4k
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Comment: C: Significance of column 'strand' and 'max splice overhang' in STAR output
5.4 years ago by snishtala03 ▴ 70
0
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2
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1.4k
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Significance of column 'strand' and 'max splice overhang' in STAR output
RNA-Seq STAR splicing
updated 5.4 years ago by 45k • written 5.4 years ago by ▴ 70
0
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1
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1.2k
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Comment: C: single contig de novo assembly
5.6 years ago by snishtala03 ▴ 70
1
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4
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1.2k
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single contig de novo assembly
RNA-Seq de-novo assembly contig
5.6 years ago by snishtala03 ▴ 70
0
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0
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1.5k
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Comment: C: Splicing in virus using long read sequencing
5.7 years ago by snishtala03 ▴ 70
0
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0
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1.5k
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Comment: C: Splicing in virus using long read sequencing
5.9 years ago by snishtala03 ▴ 70
0
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1
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1.5k
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Comment: C: Splicing in virus using long read sequencing
5.9 years ago by snishtala03 ▴ 70
0
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5
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1.5k
views
Splicing in virus using long read sequencing
pacbio minimap2 splicing long read sequencing
5.9 years ago by snishtala03 ▴ 70
0
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0
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1.6k
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primers for PacBio lima software
pacbio lima primer isoseq clontech
6.0 years ago by snishtala03 ▴ 70
0
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0
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2.1k
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Comment: C: count reads mapped to multiple locations only once
6.2 years ago by snishtala03 ▴ 70
1
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3
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2.1k
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count reads mapped to multiple locations only once
bwa alignment samtools multiple mapping
6.2 years ago by snishtala03 ▴ 70
4
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0
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18k
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Answer: A: samtools stats result different from samtools flagstat
6.2 years ago by snishtala03 ▴ 70
0
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1
reply
4.0k
views
Comment: C: bbmerge merged read smaller that original reads
6.2 years ago by snishtala03 ▴ 70
1
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3
replies
4.0k
views
bbmerge merged read smaller that original reads
bbmerge fastq alignment flash vsearch
updated 6.2 years ago by 45k • written 6.2 years ago by ▴ 70
0
votes
1
reply
38k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.2 years ago by snishtala03 ▴ 70
0
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1
reply
38k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.2 years ago by snishtala03 ▴ 70
0
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1
reply
38k
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Comment: A: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.2 years ago by snishtala03 ▴ 70
0
votes
1
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38k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.2 years ago by snishtala03 ▴ 70
0
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0
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9.3k
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Comment: C: SAM flag and select reads that map uniquely
6.2 years ago by snishtala03 ▴ 70
0
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0
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1.6k
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Comment: C: Get read start site using bedtools from bam file after merging paired end data
6.2 years ago by snishtala03 ▴ 70
0
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1
reply
1.6k
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Comment: C: Get read start site using bedtools from bam file after merging paired end data
6.2 years ago by snishtala03 ▴ 70
0
votes
3
replies
1.6k
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Get read start site using bedtools from bam file after merging paired end data
RNA-Seq bbmerge bedtools samtools alignment
6.3 years ago by snishtala03 ▴ 70
0
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0
replies
1.4k
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read simulation and quantification
RNA-Seq simulation quantification fasta
7.8 years ago by snishtala03 ▴ 70
2
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6
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7.1k
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GAGE or GSEABase using expression data and pathway.gmt file for mouse
RNA-Seq R GAGE GSEA Pathway
updated 8.1 years ago by ▴ 440 • written 8.1 years ago by ▴ 70
0
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0
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7.1k
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Comment: C: GAGE or GSEABase using expression data and pathway.gmt file for mouse
8.1 years ago by snishtala03 ▴ 70
0
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0
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6.6k
views
Comment: C: How to convert UCSC transcript(isforms) ids to Ensemble transcript ids?
8.3 years ago by snishtala03 ▴ 70
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