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0
votes
0
replies
468
views
Meta analysis using METAL
gwas
METAL
updated 10 months ago by
Ram
44k • written 10 months ago by
khn
▴ 130
0
votes
0
replies
1.9k
views
Comment:
Comment: Merge Score in plink
10 months ago by
khn
▴ 130
0
votes
1
reply
1.9k
views
Comment:
Comment: Merge Score in plink
11 months ago by
khn
▴ 130
0
votes
0
replies
416
views
Which is the minor allele in ped file in plink?
plink
updated 18 months ago by
GenoMax
147k • written 18 months ago by
khn
▴ 130
0
votes
0
replies
571
views
merge bfiles with different allele format by plink
plink
merge
bfile
SNP
3.2 years ago by
khn
▴ 130
0
votes
0
replies
836
views
Many mismatch allele for meta analysis by plink
SNP
snp
genome
gene
4.0 years ago by
khn
▴ 130
2
votes
1
reply
1.1k
views
FINEMAP - output files
SNP
gene
updated 4.4 years ago by
christian.benner
▴ 20 • written 4.6 years ago by
khn
▴ 130
1
vote
1
reply
974
views
How to calculate frequencies of SNPs after meta-analysis by plink?
SNP
genome
sequencing
updated 17 months ago by
Ram
44k • written 4.6 years ago by
khn
▴ 130
1
vote
1
reply
2.3k
views
Meta analysis by plink
SNP
genome
updated 17 months ago by
Ram
44k • written 4.6 years ago by
khn
▴ 130
1
vote
0
replies
2.3k
views
Answer:
A: Meta analysis by plink
4.6 years ago by
khn
▴ 130
1
vote
1
reply
948
views
Adding dosage for a SNP as a covariate to a phenotype file
SNP
genome
gene
updated 4.6 years ago by
Lemire
▴ 940 • written 4.6 years ago by
khn
▴ 130
0
votes
1
reply
1.4k
views
low genomic inflation factor
SNP
genome
sequencing
4.7 years ago by
khn
▴ 130
0
votes
1
reply
22k
views
Comment:
C: Merging bed bim fam files from chromosome 1 to 22 at one time
updated 4.8 years ago by
Ram
44k • written 6.7 years ago by
khn
▴ 130
12
votes
15
replies
22k
views
10 follow
Merging bed bim fam files from chromosome 1 to 22 at one time
SNP
genome
snp
updated 4.8 years ago by
Shicheng Guo
★ 9.5k • written 6.7 years ago by
khn
▴ 130
0
votes
1
reply
1.1k
views
Answer:
A: To keep the model of minimum p-value from the file
updated 4.8 years ago by
zx8754
12k • written 4.8 years ago by
khn
▴ 130
3
votes
6
replies
1.1k
views
To keep the model of minimum p-value from the file
SNP
gene
4.8 years ago by
khn
▴ 130
0
votes
1
reply
1.1k
views
Comment:
C: To keep the model of minimum p-value from the file
4.8 years ago by
khn
▴ 130
0
votes
0
replies
952
views
Comment:
C: Logistic regression by allelic model in plink2
4.8 years ago by
khn
▴ 130
1
vote
2
replies
952
views
Logistic regression by allelic model in plink2
SNP
genome
sequence
plink
updated 4.9 years ago by
chrchang523
11k • written 4.9 years ago by
khn
▴ 130
0
votes
2
replies
739
views
Epistatic effect for two alleles
gene
SNP
updated 5.2 years ago by
Biological information research group of Harbin m…
▴ 10 • written 5.2 years ago by
khn
▴ 130
1
vote
0
replies
665
views
Population stratification analysis for a small candidate gene case control study
SNP
updated 17 months ago by
Ram
44k • written 5.2 years ago by
khn
▴ 130
0
votes
0
replies
1.2k
views
nlme package for Multilevel approach
R
r
5.4 years ago by
khn
▴ 130
0
votes
0
replies
603
views
Equivalence test for multiple independent groups
r
R
5.4 years ago by
khn
▴ 130
0
votes
0
replies
4.5k
views
Answer:
A: Adding p-value to box plot
5.4 years ago by
khn
▴ 130
0
votes
6
replies
4.5k
views
Adding p-value to box plot
R
5.4 years ago by
khn
▴ 130
0
votes
0
replies
602
views
power calculation for case vs tolerant control
SNP
genome
snp
gene
5.7 years ago by
khn
▴ 130
2
votes
4
replies
4.1k
views
Binary to DNA sequence
SNP
genome
sequence
plink
updated 5.9 years ago by
zx8754
12k • written 7.5 years ago by
khn
▴ 130
0
votes
0
replies
6.0k
views
Comment:
C: Plotting two ROC curves
5.9 years ago by
khn
▴ 130
0
votes
0
replies
6.0k
views
Comment:
C: Plotting two ROC curves
5.9 years ago by
khn
▴ 130
7
votes
5
replies
6.0k
views
Plotting two ROC curves
R
updated 5.9 years ago by
Jean-Karim Heriche
27k • written 5.9 years ago by
khn
▴ 130
1
vote
0
replies
3.4k
views
Comment:
C: Sample size calculation for GWAS (fixed number of controls)
5.9 years ago by
khn
▴ 130
4
votes
2
replies
3.4k
views
Sample size calculation for GWAS (fixed number of controls)
SNP
snp
updated 5.9 years ago by
Kevin Blighe
88k • written 5.9 years ago by
khn
▴ 130
0
votes
0
replies
1.5k
views
Comment:
C: --condition-list "file" by plink
6.2 years ago by
khn
▴ 130
1
vote
2
replies
1.5k
views
--condition-list "file" by plink
plink
SNP
updated 17 months ago by
Ram
44k • written 6.2 years ago by
khn
▴ 130
0
votes
3
replies
2.0k
views
Interpretation of assoc.logistic in plink
SNP
genome
plink
updated 6.2 years ago by
zx8754
12k • written 6.2 years ago by
khn
▴ 130
0
votes
1
reply
2.0k
views
Comment:
A: Interpretation of assoc.logistic in plink
6.2 years ago by
khn
▴ 130
0
votes
0
replies
1.6k
views
Comment:
C: How to change ID of SNP in one file to adjust to the other file?
updated 6.4 years ago by
finswimmer
16k • written 6.5 years ago by
khn
▴ 130
0
votes
4
replies
1.6k
views
How to change ID of SNP in one file to adjust to the other file?
gene
SNP
genome
updated 17 months ago by
Ram
44k • written 6.5 years ago by
khn
▴ 130
0
votes
0
replies
1.1k
views
When to supsect flips after merging two datasets by plink?
SNP
snp
gene
updated 6.4 years ago by
GenoMax
147k • written 6.4 years ago by
khn
▴ 130
1
vote
0
replies
2.4k
views
Inflated qq plot and genomic inflation est. lambda
gene
SNP
genome
updated 17 months ago by
Ram
44k • written 6.5 years ago by
khn
▴ 130
0
votes
0
replies
1.6k
views
Comment:
C: How to know important SNPs?
6.5 years ago by
khn
▴ 130
0
votes
1
reply
1.6k
views
Comment:
C: How to know important SNPs?
6.5 years ago by
khn
▴ 130
0
votes
0
replies
1.6k
views
Comment:
C: How to know important SNPs?
6.5 years ago by
khn
▴ 130
0
votes
1
reply
1.6k
views
Comment:
C: How to know important SNPs?
6.5 years ago by
khn
▴ 130
4
votes
8
replies
1.6k
views
How to know important SNPs?
SNP
snp
gene
6.5 years ago by
khn
▴ 130
0
votes
0
replies
850
views
How many SNPs could be excluded from the analysis?
SNP
snp
gene
6.5 years ago by
khn
▴ 130
3
votes
1
reply
1.6k
views
Triallelic variant - GWAS
SNP
snp
gene
plink
updated 6.5 years ago by
chrchang523
11k • written 6.5 years ago by
khn
▴ 130
0
votes
0
replies
1.6k
views
Comment:
C: How to change ID of SNP in one file to adjust to the other file?
6.5 years ago by
khn
▴ 130
0
votes
0
replies
1.4k
views
Comment:
C: Can we skip --mind?
6.5 years ago by
khn
▴ 130
0
votes
1
reply
1.4k
views
Comment:
C: Can we skip --mind?
6.5 years ago by
khn
▴ 130
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