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3
votes
1
reply
912
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Answer: Answer: Collecting columns from multiple files into one file
15 months ago by Andrés Ribone ▴ 60
1
vote
0
replies
727
views
MethylKit::calculateDiffMeth with two experimental factors
methylation bisulphite sequencing differential EM-seq
15 months ago by Andrés Ribone ▴ 60
0
votes
0
replies
1.1k
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Comment: C: freebayes not reading the chunks of regions file
4.0 years ago by Andrés Ribone ▴ 60
0
votes
1
reply
1.4k
views
Variance Stabilizing Transformation on RNAseqs coming from different studies
RNA-Seq WGCNA VST
updated 4.0 years ago by 88k • written 4.0 years ago by ▴ 60
0
votes
1
reply
25k
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Comment: C: The RNA-Seq data input for WGCNA in terms of gene co-expression network construc
4.0 years ago by Andrés Ribone ▴ 60
0
votes
1
reply
25k
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Comment: C: The RNA-Seq data input for WGCNA in terms of gene co-expression network construc
4.0 years ago by Andrés Ribone ▴ 60
2
votes
4
replies
1.9k
views
featureCounts log: "WARNING contig is not found in the provided genome file!"
RNA-Seq featureCounts SubRead
updated 4.8 years ago by ▴ 210 • written 4.8 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Issue with Salmon and Deseq2 with paired-end and single-end reads libraries
salmon deseq2 rnaseq tximport
updated 9 months ago by • 0 • written 4.8 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Population / Reference bias in GATK BQSR BaseRecalibrator?
GATK BQSR population bias non model organism
5.0 years ago by Andrés Ribone ▴ 60
0
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0
replies
3.6k
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Comment: C: DESeq2: why the independent filtering threshold would come back as NULL please?
6.4 years ago by Andrés Ribone ▴ 60
0
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0
replies
4.8k
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Comment: C: How do I find input arguments (RGPU, RGLB, etc) for AddOrReplaceReadGroups
6.5 years ago by Andrés Ribone ▴ 60
0
votes
0
replies
1.4k
views
Cmscan multithreading issue
infernal rfam cmscan transcriptome assembly
7.0 years ago by Andrés Ribone ▴ 60
2
votes
1
reply
2.0k
views
Bowtie2 orientation mapping question
Bowtie2 orientation discordantly
updated 7.3 years ago by 104k • written 7.3 years ago by ▴ 60
0
votes
0
replies
20k
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Comment: C: Orientation in paired-end sequencing?
7.3 years ago by Andrés Ribone ▴ 60
1
vote
1
reply
1.8k
views
De novo transcriptome assembly of low amount of Illumina reads with MIRA
RNA-Seq MIRA de novo
updated 7.5 years ago by 35k • written 7.5 years ago by ▴ 60
0
votes
0
replies
5.8k
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Comment: C: How to decide Kmer size for RNA seq analysis using Trinity
7.5 years ago by Andrés Ribone ▴ 60
3
votes
2
replies
2.1k
views
Fast visualisation of BLAST search hits' annotations
blast annotation visualisation
updated 7.6 years ago by 164k • written 7.7 years ago by ▴ 60
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