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Comment: Comment: STAR 2.7.11b FATAL ERROR could not open genome file genomeParameters.txt but it
3 months ago by msimmer92 ▴ 310
0
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1
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703
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Comment: Comment: STAR 2.7.11b FATAL ERROR could not open genome file genomeParameters.txt but it
3 months ago by msimmer92 ▴ 310
1
vote
4
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703
views
STAR 2.7.11b FATAL ERROR could not open genome file genomeParameters.txt but it is not generated in this version
STAR
updated 3 months ago by 45k • written 3 months ago by ▴ 310
0
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0
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3.1k
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Comment: Comment: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
4.1 years ago by msimmer92 ▴ 310
0
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0
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3.1k
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Comment: Comment: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
4.1 years ago by msimmer92 ▴ 310
4
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3
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3.1k
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Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
uniquely RNA-seq mapping bulk downsampling
4.1 years ago by msimmer92 ▴ 310
1
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0
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7.8k
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Comment: Comment: How to filter out a list of specific genes from the DESeq object in R - bulk RNA
4.1 years ago by msimmer92 ▴ 310
9
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4
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7.8k
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How to filter out a list of specific genes from the DESeq object in R - bulk RNA-seq differential expression
R bulk object DESeq2 filter
4.1 years ago by msimmer92 ▴ 310
0
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3
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2.0k
views
Generalizing snakemake MACS2 code - WildcardError Wildcards in input files cannot be determined from output files: 'sample'
snakemake
updated 5.1 years ago by 23k • written 5.2 years ago by ▴ 310
0
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0
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2.0k
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Comment: C: Generalizing snakemake MACS2 code - WildcardError Wildcards in input files canno
5.2 years ago by msimmer92 ▴ 310
2
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0
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4.6k
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Answer: A: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
5.2 years ago by msimmer92 ▴ 310
5
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4
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4.6k
views
Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/cwl in rule
snakemake syntaxerror rule keywords
5.2 years ago by msimmer92 ▴ 310
0
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1
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4.6k
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Comment: C: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
5.2 years ago by msimmer92 ▴ 310
0
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1
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10k
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Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
5.4 years ago by msimmer92 ▴ 310
0
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0
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2.2k
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Comment: C: Heterogeneity from bulk ChIP-seq or ATAC-seq data
5.6 years ago by msimmer92 ▴ 310
0
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1
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9.8k
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Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
5.6 years ago by msimmer92 ▴ 310
2
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3
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2.2k
views
Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity ChIP-seq ATAC-seq clustering
updated 5.6 years ago by ★ 19k • written 5.6 years ago by ▴ 310
0
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1
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3.5k
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Comment: C: Downsampling single-end human ChIP-seq data
6.0 years ago by msimmer92 ▴ 310
0
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0
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3.7k
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Comment: C: Get all gene symbol in kegg pathway with clusterProfiler
6.0 years ago by msimmer92 ▴ 310
0
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0
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3.5k
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Comment: C: Downsampling single-end human ChIP-seq data
6.0 years ago by msimmer92 ▴ 310
0
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1
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3.5k
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Comment: C: Downsampling single-end human ChIP-seq data
6.0 years ago by msimmer92 ▴ 310
7
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7
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3.5k
views
Downsampling single-end human ChIP-seq data
ChIP-Seq downsampling subsampling
updated 6.0 years ago by ★ 1.1k • written 6.0 years ago by ▴ 310
4
votes
7
replies
3.2k
views
How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
diffbind R ChIP-Seq
updated 6.1 years ago by 88k • written 6.1 years ago by ▴ 310
0
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0
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3.2k
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Comment: C: How to properly organize a DiffBind analysis to normalize data across conditions
6.1 years ago by msimmer92 ▴ 310
0
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1
reply
3.2k
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Comment: C: How to properly organize a DiffBind analysis to normalize data across conditions
6.1 years ago by msimmer92 ▴ 310
0
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2
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3.2k
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Comment: C: How to properly organize a DiffBind analysis to normalize data across conditions
6.1 years ago by msimmer92 ▴ 310
0
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0
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9.8k
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Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
6.1 years ago by msimmer92 ▴ 310
0
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1
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9.8k
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Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
6.1 years ago by msimmer92 ▴ 310
1
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0
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2.8k
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Answer: A: How to zoom out to whole genome view in UCSC browser?
6.1 years ago by msimmer92 ▴ 310
6
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5
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2.8k
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How to zoom out to whole genome view in UCSC browser?
UCSC browser bigWig
6.1 years ago by msimmer92 ▴ 310
0
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1
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6.5k
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Comment: C: How to compare bigwig tracks of two ATAC libraries.
6.1 years ago by msimmer92 ▴ 310
0
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0
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36k
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Comment: C: Converstion of BED with scores into bigWig
6.1 years ago by msimmer92 ▴ 310
0
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0
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36k
views
Comment: C: Converstion of BED with scores into bigWig
6.1 years ago by msimmer92 ▴ 310
0
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1
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36k
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Comment: C: Converstion of BED with scores into bigWig
6.1 years ago by msimmer92 ▴ 310
1
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0
replies
36k
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Comment: C: Converstion of BED with scores into bigWig
6.1 years ago by msimmer92 ▴ 310
1
vote
1
reply
2.4k
views
How to interpret fast or multiQC reports of easy HiC or HiC data
HiC easyHiC fastqc
6.2 years ago by msimmer92 ▴ 310
0
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0
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2.8k
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Comment: C: How to zoom out to whole genome view in UCSC browser?
6.2 years ago by msimmer92 ▴ 310
1
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2
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74k
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Comment: C: Is My Bam File Sorted ?
6.2 years ago by msimmer92 ▴ 310
0
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0
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2.8k
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Comment: C: How to zoom out to whole genome view in UCSC browser?
6.2 years ago by msimmer92 ▴ 310
0
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0
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3.2k
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Comment: C: Can bedtools subtract support multiple files?
6.2 years ago by msimmer92 ▴ 310
2
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2
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3.2k
views
Can bedtools subtract support multiple files?
bedtools
6.2 years ago by msimmer92 ▴ 310
0
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0
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13k
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Comment: C: how to add bed files together
6.2 years ago by msimmer92 ▴ 310
0
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1
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13k
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Comment: C: how to add bed files together
6.2 years ago by msimmer92 ▴ 310
0
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0
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13k
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Comment: C: how to add bed files together
6.2 years ago by msimmer92 ▴ 310
0
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0
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32k
views
Comment: C: What is the difference between narrow peak, Broad peak and a gapped peak of a c
6.3 years ago by msimmer92 ▴ 310
0
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1
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9.8k
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Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
6.3 years ago by msimmer92 ▴ 310
0
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0
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7.0k
views
Comment: C: MACS2 for K27me3 peak calling
6.3 years ago by msimmer92 ▴ 310
3
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8
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9.8k
views
DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R DiffBind ChIP-Seq
6.3 years ago by msimmer92 ▴ 310
0
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1
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2.0k
views
R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
DiffBind R ChIP-Seq
updated 6.3 years ago by 9.0k • written 6.3 years ago by ▴ 310
0
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0
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3.2k
views
Comment: C: How to correlate chip seq peaks?
6.3 years ago by msimmer92 ▴ 310
101 results • Page 1 of 3
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