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0
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5
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5.0k
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How to highlight DE genes in plotMD ?
edgeR plotMD volcanoplot mirnaseq
updated 4.0 years ago by • 0 • written 7.1 years ago by ▴ 110
0
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1
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1.6k
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I have few Differentially expressed miRNAs out of edgeR ?
miRNAs pathway analysis enrichment analysis GO
updated 4.4 years ago by 89k • written 7.0 years ago by ▴ 110
1
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1
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1.6k
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How to decode patient barcode inTCGA database ?
tcga patient GDC R
updated 4.9 years ago by 20 • written 6.8 years ago by ▴ 110
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2
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2.4k
views
Are there good reference for miRNA microRNA pathway analysis in R following edgeR run?
mirna microrna pathway analysis
updated 6.1 years ago by ▴ 70 • written 7.2 years ago by ▴ 110
0
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1
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1.6k
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Should I remove samples after normalization of miRNA seq read counts ?
rna-seq RNA-Seq edgeR miRNAs
updated 6.5 years ago by 20 • written 7.2 years ago by ▴ 110
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1
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2.0k
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Comment: C: How to create design matrix for confounder (here sunlight) in edgeR ?
6.6 years ago by Björn ▴ 110
0
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3
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2.0k
views
How to create design matrix for confounder (here sunlight) in edgeR ?
edger rnaseq
updated 6.6 years ago by 8.4k • written 6.6 years ago by ▴ 110
1
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2
replies
4.3k
views
TCGA patient variable data dictionary
tcga mirna
updated 6.6 years ago by 89k • written 6.6 years ago by ▴ 110
0
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1
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3.5k
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Comment: C: Problem with low count removal in edgeR ?
6.6 years ago by Björn ▴ 110
0
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1
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3.5k
views
Comment: C: Problem with low count removal in edgeR ?
6.6 years ago by Björn ▴ 110
0
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1
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3.5k
views
Comment: C: Problem with low count removal in edgeR ?
6.6 years ago by Björn ▴ 110
0
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1
reply
3.5k
views
Comment: C: Problem with low count removal in edgeR ?
updated 6.6 years ago by 105k • written 6.6 years ago by ▴ 110
0
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9
replies
3.5k
views
Problem with low count removal in edgeR ?
edgeR mirna Differential expression
6.6 years ago by Björn ▴ 110
3
votes
7
replies
3.8k
views
How to create PCA plot and heatmaps using only significant genes in edgeR ?
edgeR heatmaps PCA R
updated 6.6 years ago by 12k • written 6.8 years ago by ▴ 110
3
votes
2
replies
4.1k
views
Why DE genes are not among highly variable genes between groups
edgeR variance mirna
updated 6.7 years ago by 20 • written 7.0 years ago by ▴ 110
0
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0
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1.4k
views
what to use in "Geneinfo" for miRNA in -TCGAanalyze_Normalization- of TCGAbiolinks
tcga mirna normalization geneinfo
6.7 years ago by Björn ▴ 110
0
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0
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1.0k
views
Answer: A: Is miRNA microarray better than NGS for circulating miRNA quantification?
6.7 years ago by Björn ▴ 110
0
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0
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4.1k
views
Comment: C: How to make circos plot in R for miRNA and target genes retrieved from targetsca
6.8 years ago by Björn ▴ 110
0
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2
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3.8k
views
Comment: C: How to create PCA plot and heatmaps using only significant genes in edgeR ?
6.8 years ago by Björn ▴ 110
3
votes
8
replies
4.1k
views
How to make circos plot in R for miRNA and target genes retrieved from targetscan?
circos plot mirna genes targetscan R
updated 6.8 years ago by ★ 1.1k • written 6.8 years ago by ▴ 110
0
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1
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4.1k
views
Comment: C: How to make circos plot in Rstudio for miRNA and target genes retrieved from tar
6.8 years ago by Björn ▴ 110
0
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0
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4.1k
views
Comment: C: How to make circos plot in Rstudio for miRNA and target genes retrieved from tar
6.8 years ago by Björn ▴ 110
0
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6
replies
1.5k
views
Conduct miRNA (normalized) sequencing using TCGA-PRAD database for survival analysis ?
tcga mirna GUI linkedomics TCGAbiolinksGUI
updated 6.8 years ago by • 0 • written 6.9 years ago by ▴ 110
0
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0
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2.0k
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Comment: A: How to find patient sample.type in TCGA-PRAD ?
6.8 years ago by Björn ▴ 110
0
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2
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2.0k
views
How to find patient sample.type in TCGA-PRAD ?
TCGAbiolinks sample.type clinical.patient
6.8 years ago by Björn ▴ 110
2
votes
8
replies
3.5k
views
Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
tcgabiolinks xml clinical data
updated 6.9 years ago by • 0 • written 6.9 years ago by ▴ 110
2
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3
replies
2.8k
views
How to link "miRNA gene quantification" and "clinical- Patient" data retrieved from TCGA
TCGA contrast mirnaseq edger
6.9 years ago by Björn ▴ 110
0
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1
reply
2.8k
views
Comment: A: How to link "miRNA gene quantification" and "clinical- Patient" data retrieved f
6.9 years ago by Björn ▴ 110
0
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1
reply
3.5k
views
Comment: C: Why "Parse XML clinical data" in TCGAbiolinks gives error in Rstudio ?
6.9 years ago by Björn ▴ 110
0
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1
reply
1.5k
views
Comment: C: Conduct miRNA (normalized) sequencing using TCGA-PRAD database for survival anal
6.9 years ago by Björn ▴ 110
0
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0
replies
1.3k
views
How to link clinical data with DE miRNA data retrieved using TCGAbiolinks
tcgabiolinks mirna clinical
6.9 years ago by Björn ▴ 110
2
votes
1
reply
3.1k
views
TCGAbiolinks download error
tcga tcgabiolinks R
updated 6.9 years ago by 12k • written 6.9 years ago by ▴ 110
0
votes
1
reply
1.5k
views
Comment: C: Conduct miRNA (normalized) sequencing using TCGA-PRAD database for survival anal
6.9 years ago by Björn ▴ 110
0
votes
1
reply
19k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
6.9 years ago by Björn ▴ 110
0
votes
1
reply
1.3k
views
How to combine differentially expressed miRNAs to calculate molecular signature score in edgeR?
edgeR mirna DE molecular signature
updated 6.9 years ago by 89k • written 6.9 years ago by ▴ 110
0
votes
0
replies
966
views
Why not investigate non-DE miRNAs ?
RNA-Seq differentially expressed DE miRNA edgeR
6.9 years ago by Björn ▴ 110
1
vote
1
reply
1.4k
views
How to present up and down regulated, and unchanged miRNAs in paired samples using Rstudio?
r rna-seq mirna venn diagram
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 110
0
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1
reply
1.1k
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How to find miRNAs of interest in TCGA ?
rna-seq tcga
7.0 years ago by Björn ▴ 110
0
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0
replies
4.1k
views
Comment: C: MicroRNA-target interactions databases
7.0 years ago by Björn ▴ 110
0
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1
reply
4.1k
views
Comment: A: MicroRNA-target interactions databases
7.0 years ago by Björn ▴ 110
3
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1
reply
3.5k
views
what is the function of prior.count in lcpm ?
RNA-Seq lcpm edgeR
7.0 years ago by Björn ▴ 110
0
votes
1
reply
2.4k
views
How to create heatmaps only with DE genes in edgeR
edgeR heatmap.2 pheatmap DE genes
updated 7.0 years ago by ▴ 240 • written 7.0 years ago by ▴ 110
0
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1
reply
2.5k
views
Comment: C: How to reorder column vectors in r to use for heatmap.2
7.0 years ago by Björn ▴ 110
0
votes
4
replies
2.5k
views
How to reorder column vectors in r to use for heatmap.2
heatmap.2 vector column
7.0 years ago by Björn ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: how to give name of genes instead of unique ID created by "lcpm" ?
updated 7.0 years ago by 151k • written 7.0 years ago by ▴ 110
0
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1
reply
2.5k
views
Comment: C: how to give name of genes instead of unique ID created by "lcpm" ?
7.0 years ago by Björn ▴ 110
0
votes
5
replies
2.5k
views
how to give name of genes instead of unique ID created by "lcpm" ?
lcpm edgeR software error write.csv
7.0 years ago by Björn ▴ 110
0
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1
reply
5.2k
views
Comment: A: Paired line between two observations in stripchart ?
7.0 years ago by Björn ▴ 110
0
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3
replies
5.2k
views
Paired line between two observations in stripchart ?
stripchart ggplot geom_line rstudio
7.0 years ago by Björn ▴ 110
0
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1
reply
5.0k
views
Comment: C: How to highlight DE genes in plotMD ?
7.1 years ago by Björn ▴ 110
89 results • Page 1 of 2
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