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6
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7
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5.1k
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8 follow
Online Interactive Data Visualization
python
updated 2.3 years ago by ▴ 110 • written 11.8 years ago by ★ 2.1k
1
vote
1
reply
1.7k
views
Comment: Comment: Query hg37 rsid information
3.1 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.1k
views
Comment: Comment: conversion of fasta file format to tabular format
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
6.9k
views
Comment: Comment: Csv. To VCF. File convert
3.2 years ago by Pappu ★ 2.1k
2
votes
0
replies
1.6k
views
Comment: Comment: Retrieval of Active site information programmatically
3.2 years ago by Pappu ★ 2.1k
1
vote
1
reply
952
views
Comment: Comment: Can I select only one gene from protein isoforms when doing gene ontology from a
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
570
views
Comment: Comment: Differential expression between two conditions in sc RNA seq
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
1.5k
views
Comment: Comment: Ensembl IDs
3.2 years ago by Pappu ★ 2.1k
1
vote
0
replies
5.1k
views
Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
3.2 years ago by Pappu ★ 2.1k
1
vote
1
reply
907
views
Comment: Comment: whole-genome MSA of 1000 vertebrate sequences
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
905
views
Comment: Comment: QC of UKB BGEN format data
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
6.9k
views
Comment: Comment: Csv. To VCF. File convert
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
852
views
Comment: Comment: Clustering of samples based on gene expression
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.1k
views
Comment: Comment: Fastq-dump warning: too many reads at spot id
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
1.0k
views
Comment: Comment: Heatmap rownames as gene names displayed as ensembl ID
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.4k
views
Comment: Comment: Specific case of "bedtools intersect"
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.2k
views
Comment: Comment: How to obtain gene length of yeast for tpm computation?
3.2 years ago by Pappu ★ 2.1k
1
vote
0
replies
616
views
Comment: Comment: Parameterisation of Metallo-protein with amber
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.6k
views
Comment: Comment: Get the coverage after read alignment with bwa-mem2
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.0k
views
Comment: Comment: Multiple file genome alignment with STAR
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
1.6k
views
Comment: Comment: Retrieval of Active site information programmatically
3.2 years ago by Pappu ★ 2.1k
0
votes
1
reply
5.1k
views
Answer: Answer: Batch effect correction to compare differentially expressed genes across dataset
3.2 years ago by Pappu ★ 2.1k
0
votes
0
replies
1.9k
views
Answer: Answer: GROMACS error
3.2 years ago by Pappu ★ 2.1k
23
votes
11
replies
2.5k
views
11 follow
Useful productivity tools for bioinformaticians
RNA-Seq ChIP-Seq R next-gen Python
updated 3.3 years ago by ▴ 10 • written 5.5 years ago by ★ 2.1k
0
votes
1
reply
761
views
genomic region haplotype
SNP
updated 4.4 years ago by 24k • written 4.6 years ago by ★ 2.1k
1
vote
3
replies
2.5k
views
Looking For A Database Of All Proteins Expressed/Predicted In Completely Sequenced Genomes
genome
updated 4.4 years ago by 20 • written 12.3 years ago by ★ 2.1k
2
votes
4
replies
2.4k
views
Pooling replicates for CHIP-seq peak calling
ChIP-Seq
updated 4.4 years ago by 20 • written 4.6 years ago by ★ 2.1k
0
votes
1
reply
3.0k
views
RSEM expected_count vs normalized_count
RNA-Seq
updated 4.5 years ago by ▴ 330 • written 4.6 years ago by ★ 2.1k
2
votes
3
replies
2.0k
views
fastest galaxy host
galaxy
updated 2.8 years ago by 45k • written 9.6 years ago by ★ 2.1k
2
votes
2
replies
827
views
Peak length for TF motif discovery
ChIP-Seq
updated 4.6 years ago by ▴ 230 • written 4.6 years ago by ★ 2.1k
0
votes
0
replies
2.4k
views
Comment: C: Pooling replicates for CHIP-seq peak calling
4.6 years ago by Pappu ★ 2.1k
2
votes
2
replies
910
views
Genome region annotation
next-gen ChIP-Seq
4.6 years ago by Pappu ★ 2.1k
0
votes
1
reply
2.7k
views
Comment: C: ChIP-seq Motif Enrichment
4.6 years ago by Pappu ★ 2.1k
0
votes
1
reply
2.7k
views
Comment: C: ChIP-seq Motif Enrichment
4.6 years ago by Pappu ★ 2.1k
0
votes
2
replies
2.7k
views
Comment: C: ChIP-seq Motif Enrichment
4.6 years ago by Pappu ★ 2.1k
5
votes
8
replies
2.7k
views
ChIP-seq Motif Enrichment
ChIP-Seq
4.6 years ago by Pappu ★ 2.1k
2
votes
1
reply
761
views
How to do ChIP-seq QC
ChIP-Seq
updated 4.6 years ago by ★ 19k • written 4.6 years ago by ★ 2.1k
1
vote
0
replies
4.0k
views
Comment: C: Separating each cell in fastq file
4.6 years ago by Pappu ★ 2.1k
0
votes
1
reply
1.6k
views
Comment: C: How to do a multi-snp/haplotype based GWAS instead of a single snp GWAS in R?
4.6 years ago by Pappu ★ 2.1k
3
votes
8
replies
5.6k
views
ChIP-seq or Cut and Run Differential Binding Analysis
ChIP-Seq
updated 4.6 years ago by ★ 2.1k • written 4.6 years ago by ★ 2.1k
0
votes
0
replies
1.2k
views
Comment: C: Organizing Scripts for Bioinformatics Analysis
4.6 years ago by Pappu ★ 2.1k
5
votes
4
replies
1.2k
views
Organizing Scripts for Bioinformatics Analysis
RNA-Seq ChIP-Seq R python
updated 4.6 years ago by 88k • written 4.6 years ago by ★ 2.1k
0
votes
0
replies
5.6k
views
Comment: C: ChIP-seq or Cut and Run Differential Binding Analysis
4.6 years ago by Pappu ★ 2.1k
0
votes
1
reply
5.6k
views
Comment: C: ChIP-seq or Cut and Run Differential Binding Analysis
4.6 years ago by Pappu ★ 2.1k
2
votes
3
replies
2.3k
views
combining reads from multiple lanes for DE analysis
RNA-Seq
updated 5.3 years ago by 15k • written 6.4 years ago by ★ 2.1k
0
votes
1
reply
3.6k
views
Comment: C: GUI framework for sequence data analysis and visulaization
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.1k
0
votes
1
reply
3.6k
views
Comment: C: GUI framework for sequence data analysis and visulaization
updated 5.5 years ago by 45k • written 9.5 years ago by ★ 2.1k
0
votes
1
reply
1.1k
views
Comment: C: DE Analysis of Protein Coding Genes
5.7 years ago by Pappu ★ 2.1k
2
votes
3
replies
1.1k
views
DE Analysis of Protein Coding Genes
RNA-Seq
5.7 years ago by Pappu ★ 2.1k
2
votes
2
replies
2.7k
views
Genomic Locus Diagram
python biopython
updated 6.2 years ago by 20 • written 11.3 years ago by ★ 2.1k
429 results • Page 1 of 9
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