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1
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4
replies
1.8k
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Differential methylation with 1 sample only
methseq RNA-Seq methylation
updated 3.7 years ago by ▴ 110 • written 7.3 years ago by ▴ 350
4
votes
3
replies
2.3k
views
Correlating methylation and expression do i need normalization?
RNA-Seq methyl-seq correlations
updated 5.3 years ago by 20 • written 7.2 years ago by ▴ 350
13
votes
11
replies
6.3k
views
TCGA immunotherapy treated melanoma data
mutation tcga SNP
updated 2.2 years ago by 45k • written 6.8 years ago by ▴ 350
4
votes
6
replies
6.9k
views
Is it possible to find a human genome STAR index to not have to create it on my laptop?
RNA-Seq STAR idex STAR Human genome mapping
updated 5.7 years ago by 20 • written 7.4 years ago by ▴ 350
1
vote
1
reply
3.9k
views
StringDB get enrichment KEGG
kegg enrichment R
updated 5.9 years ago by ▴ 10 • written 7.2 years ago by ▴ 350
8
votes
3
replies
2.5k
views
All CpG sites in human genome RRBS
BSSeq RRBS Genome Human
updated 6.3 years ago by ▴ 110 • written 6.7 years ago by ▴ 350
0
votes
2
replies
2.1k
views
Comment: C: What is the target region size for total rnaseq?
6.3 years ago by Pin.Bioinf ▴ 350
0
votes
2
replies
2.1k
views
Comment: C: What is the target region size for total rnaseq?
6.3 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
2.1k
views
Comment: C: What is the target region size for total rnaseq?
6.3 years ago by Pin.Bioinf ▴ 350
0
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1
reply
2.1k
views
Comment: C: What is the target region size for total rnaseq?
6.3 years ago by Pin.Bioinf ▴ 350
5
votes
11
replies
2.1k
views
What is the target region size for total rnaseq?
RNA-Seq
6.3 years ago by Pin.Bioinf ▴ 350
0
votes
0
replies
1.4k
views
From mpileup on bam files to TMB calculation, how is it done?
mutations TMB snps bam mpileup
6.3 years ago by Pin.Bioinf ▴ 350
1
vote
0
replies
1.6k
views
How to check for the correlation between gene expression counts and clinical categorical variables?
correlations ANOVA clinical genecounts
6.4 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
1.2k
views
How to build a phylogenetic tree (breast cancer samples)
phylogenetic tree phylogenetics
6.4 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
1.9k
views
Comment: C: Why some tumors are grouped with the controls?
6.4 years ago by Pin.Bioinf ▴ 350
0
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1
reply
1.9k
views
Comment: C: Why some tumors are grouped with the controls?
6.4 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
1.9k
views
Comment: C: Why some tumors are grouped with the controls?
6.4 years ago by Pin.Bioinf ▴ 350
11
votes
7
replies
1.9k
views
Why some tumors are grouped with the controls?
Methylation cpgs
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 350
0
votes
1
reply
4.1k
views
Comment: C: Different samples order in .ped and phynotype data files
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
4.4k
views
Comment: C: PLINK assoc input: can it be two vcf files case/control?
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
4.4k
views
Comment: C: PLINK assoc input: can it be two vcf files case/control?
6.5 years ago by Pin.Bioinf ▴ 350
6
votes
5
replies
4.4k
views
PLINK assoc input: can it be two vcf files case/control?
PLINK vcf snps association
updated 6.5 years ago by 89k • written 6.5 years ago by ▴ 350
0
votes
0
replies
3.5k
views
Comment: C: Comparing VCF files between two groups (15 vcf files against 15 vcf files)
6.5 years ago by Pin.Bioinf ▴ 350
4
votes
2
replies
3.5k
views
Comparing VCF files between two groups (15 vcf files against 15 vcf files)
vcf SNP variants PLINK
updated 6.5 years ago by ★ 1.5k • written 6.5 years ago by ▴ 350
0
votes
0
replies
881
views
How to design an analysis pipeline for genes with SNPs by samples? Build a matrix?
SNP Variants
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
3.1k
views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
3.1k
views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
7
replies
3.1k
views
Heatmap of methylation beta values scale='rows' seems off
methylation beta-values heatmap z-score
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
3.1k
views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
0
replies
1.6k
views
nsolver p values for signature scores in pathways
nsolver pathifier pathways nanostring pvalue
6.5 years ago by Pin.Bioinf ▴ 350
5
votes
3
replies
3.6k
views
How can I call somatic CNV in tumor samples with no reference (control) samples?
CNV tumor
updated 6.5 years ago by 89k • written 6.5 years ago by ▴ 350
0
votes
1
reply
1.1k
views
Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
varscan CNA CNV SNP
updated 6.5 years ago by 20 • written 6.5 years ago by ▴ 350
0
votes
0
replies
2.5k
views
Comment: C: CNV, CNA and SNP calling
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
2
replies
2.5k
views
Comment: C: CNV, CNA and SNP calling
6.5 years ago by Pin.Bioinf ▴ 350
4
votes
5
replies
2.5k
views
CNV, CNA and SNP calling
CNA CNV SNP
updated 6.5 years ago by 11k • written 6.5 years ago by ▴ 350
0
votes
0
replies
1.5k
views
Copy number alteration from .bam files panelcn.mops
panel CNV CNA cn.mops
6.5 years ago by Pin.Bioinf ▴ 350
0
votes
0
replies
1.8k
views
Comment: C: bedgraph file format in IGV: good for observing CNV ?
6.6 years ago by Pin.Bioinf ▴ 350
1
vote
3
replies
1.8k
views
bedgraph file format in IGV: good for observing CNV ?
igv cnv bedgraph
6.6 years ago by Pin.Bioinf ▴ 350
3
votes
2
replies
4.4k
views
How can I tell if there is CNV for specific gene in IGV?
cnv igv
updated 6.6 years ago by ★ 2.6k • written 6.6 years ago by ▴ 350
8
votes
8
replies
6.4k
views
Total RNA-Seq vs mRNA-Seq
RNA-Seq
updated 6.6 years ago by ★ 4.2k • written 6.6 years ago by ▴ 350
0
votes
1
reply
6.4k
views
Comment: A: Total RNA-Seq vs mRNA-Seq
6.6 years ago by Pin.Bioinf ▴ 350
0
votes
2
replies
6.4k
views
Comment: C: Total RNA-Seq vs mRNA-Seq
6.6 years ago by Pin.Bioinf ▴ 350
0
votes
0
replies
3.0k
views
Comment: C: Can I compute Tumour Mutational Burden from rnaseq fastq files?
6.6 years ago by Pin.Bioinf ▴ 350
3
votes
2
replies
3.0k
views
Can I compute Tumour Mutational Burden from rnaseq fastq files?
TMB RNA-Seq SNP VCF
6.6 years ago by Pin.Bioinf ▴ 350
6
votes
4
replies
1.7k
views
Sequenced sample twice, can I merge the fastqs to analyze?
rnaseq fastq
updated 6.7 years ago by 12k • written 6.7 years ago by ▴ 350
0
votes
0
replies
1.7k
views
Comment: C: Sequenced sample twice, can I merge the fastqs to analyze?
6.7 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
2.4k
views
Comment: C: Find out the mutation type from TCGA data
6.7 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
2.4k
views
Comment: C: Find out the mutation type from TCGA data
6.7 years ago by Pin.Bioinf ▴ 350
0
votes
0
replies
1.7k
views
Answer: A: About TCGA CNV probes
6.7 years ago by Pin.Bioinf ▴ 350
0
votes
1
reply
2.4k
views
Comment: C: Find out the mutation type from TCGA data
6.7 years ago by Pin.Bioinf ▴ 350
127 results • Page 1 of 3
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