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10
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3
replies
3.3k
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Should PCR duplicates always be removed?
GBS Samtools PCR duplicates
updated 6.7 years ago by 20 • written 7.5 years ago by ▴ 20
0
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1
reply
3.7k
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Comment: C: Speed up GATK joint genotype calling?
7.2 years ago by jtwalker ▴ 20
0
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4
replies
3.7k
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Speed up GATK joint genotype calling?
gatk GATK Joint Genotyping
7.2 years ago by jtwalker ▴ 20
0
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0
replies
4.7k
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Answer: A: Badly formed genome location? GATK GenotypeGVCFs
7.2 years ago by jtwalker ▴ 20
0
votes
7
replies
4.7k
views
Badly formed genome location? GATK GenotypeGVCFs
GATK Joint genotyping
7.2 years ago by jtwalker ▴ 20
3
votes
1
reply
6.0k
views
VCF format: what does AD 1,0 denote?
VCF
updated 7.3 years ago by 164k • written 7.3 years ago by ▴ 20
0
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0
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4.7k
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Comment: C: Badly formed genome location? GATK GenotypeGVCFs
7.3 years ago by jtwalker ▴ 20
0
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1
reply
4.7k
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Comment: C: Badly formed genome location? GATK GenotypeGVCFs
7.3 years ago by jtwalker ▴ 20
0
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1
reply
4.7k
views
Comment: C: Badly formed genome location? GATK GenotypeGVCFs
7.3 years ago by jtwalker ▴ 20
1
vote
4
replies
2.8k
views
Filtering on MAF using the GATK?
gatk GATK variant filtering SNP filtering
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 20
0
votes
1
reply
2.8k
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Comment: C: Regarding vcf output
7.5 years ago by jtwalker ▴ 20
0
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0
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2.7k
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Comment: C: GATK variantFiltration unexpected behaviour?
7.5 years ago by jtwalker ▴ 20
0
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0
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2.7k
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Comment: C: GATK variantFiltration unexpected behaviour?
7.5 years ago by jtwalker ▴ 20
2
votes
5
replies
2.7k
views
GATK variantFiltration unexpected behaviour?
SNP GATK variant filtration
7.5 years ago by jtwalker ▴ 20
0
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0
replies
2.8k
views
Comment: C: Filtering on MAF using the GATK?
7.5 years ago by jtwalker ▴ 20
0
votes
1
reply
2.8k
views
Comment: C: Filtering on MAF using the GATK?
7.5 years ago by jtwalker ▴ 20
1
vote
1
reply
2.1k
views
Answer: A: Any advanced and really structured course on Python language or My Sql or R or U
7.5 years ago by jtwalker ▴ 20
2
votes
2
replies
3.0k
views
How to filter a multisample VCF based on individual sample depth?
samtools mpileup vcf gbs
updated 3.5 years ago by ▴ 10 • written 7.5 years ago by ▴ 20
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