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Deconvolution: bulk and cell signature data from different platforms or technologies
CIBERSORT RNASeq Microarray deconvolution signature
9 months ago by zhang.jianhai ▴ 30
0
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0
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973
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Comment: Comment: Single-cell RNA Seq on whole organ or whole tissue with known cell origins
3.3 years ago by zhang.jianhai ▴ 30
1
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2
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973
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Single-cell RNA Seq on whole organ or whole tissue with known cell origins
known-cell-origin whole-organ single-cell-RNA-Seq whole-tissue
3.3 years ago by zhang.jianhai ▴ 30
0
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1
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876
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Filter RNA-seq matrix
rna-seq cv
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 30
0
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0
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3.6k
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Comment: C: RPKM/CPM/FPKM to log2 units
4.9 years ago by zhang.jianhai ▴ 30
0
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1
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3.6k
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Comment: C: RPKM/CPM/FPKM to log2 units
4.9 years ago by zhang.jianhai ▴ 30
5
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4
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3.6k
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RPKM/CPM/FPKM to log2 units
RPKM log2
updated 4.9 years ago by ★ 6.9k • written 4.9 years ago by ▴ 30
0
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0
replies
623
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Gene network module identification methods
gene network module
4.9 years ago by zhang.jianhai ▴ 30
0
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10
replies
5.5k
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functional enichment with custom gene annotation
enrichment
updated 4.9 years ago by ▴ 140 • written 5.0 years ago by ▴ 30
0
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0
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953
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Comment: C: Well studied gene networks/pathways in rice
5.0 years ago by zhang.jianhai ▴ 30
0
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1
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5.5k
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Comment: C: functional enichment with custom gene annotation
5.0 years ago by zhang.jianhai ▴ 30
0
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0
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5.5k
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Comment: C: functional enichment with custom gene annotation
5.0 years ago by zhang.jianhai ▴ 30
1
vote
4
replies
953
views
Well studied gene networks/pathways in rice
pathway rice
5.0 years ago by zhang.jianhai ▴ 30
0
votes
1
reply
953
views
Comment: C: Well studied networks/pathways in rice
5.0 years ago by zhang.jianhai ▴ 30
0
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1
reply
5.5k
views
Comment: C: functional enichment with custom gene annotation
5.0 years ago by zhang.jianhai ▴ 30
0
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0
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5.5k
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Comment: C: functional enichment with custom gene annotation
5.0 years ago by zhang.jianhai ▴ 30
0
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1
reply
866
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Enrichment of pathways, reactome, known networks in rice
pathway reactome known networks rice
5.0 years ago by zhang.jianhai ▴ 30
0
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1
reply
2.1k
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Comment: C: Network construction methods using Bayesian Network or mutual information
5.8 years ago by zhang.jianhai ▴ 30
0
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0
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1.4k
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Comment: C: Partial correlation matrix and gene cluster
5.8 years ago by zhang.jianhai ▴ 30
2
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6
replies
2.1k
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Network construction methods using Bayesian Network or mutual information
gene network Bayesian network mutual information
5.8 years ago by zhang.jianhai ▴ 30
4
votes
2
replies
1.4k
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Partial correlation matrix and gene cluster
partial correlation matrix gene network
updated 5.8 years ago by 27k • written 5.8 years ago by ▴ 30
0
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0
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2.6k
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Comment: C: How to plot two networks with overlapping nodes?
6.4 years ago by zhang.jianhai ▴ 30
0
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1
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2.6k
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Comment: C: How to plot two networks with overlapping nodes?
6.4 years ago by zhang.jianhai ▴ 30
1
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4
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2.6k
views
How to plot two networks with overlapping nodes?
network
6.4 years ago by zhang.jianhai ▴ 30
8
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14
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7.2k
views
7 follow
GO enrichment analysis with human ENSEMBL ids
R RNA-Seq ensembl GO enrichment edgeR
updated 7.4 years ago by • 0 • written 7.5 years ago by ▴ 30
0
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1
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2.6k
views
DiffCorr: cannot run Bellman-Ford algorithm, Negative loop detected while calculating shortest paths
Pacakge DiffCorr graph clustering
updated 7.4 years ago by 27k • written 7.4 years ago by ▴ 30
0
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1
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7.2k
views
Comment: C: GO enrichment analysis with human ENSEMBL ids
7.5 years ago by zhang.jianhai ▴ 30
0
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3
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7.2k
views
Comment: A: GO enrichment analysis with human ENSEMBL ids
7.5 years ago by zhang.jianhai ▴ 30
0
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1
reply
7.2k
views
Comment: A: Mapping among ENSEMBL Entrez and RefSeq.
7.5 years ago by zhang.jianhai ▴ 30
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