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Comment: Comment: New scRNA-seq analysis software - Web-base - No coding needed
15 hours ago by yura.grabovska ▴ 670
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63
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Seurat/Signac multiome analysis filtering on nCounts instead of nFeatures
10x Signac Seurat multiome
16 hours ago by yura.grabovska ▴ 670
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138
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Answer: Answer: What is the difference between the SCT data stored in data and scale.data in Seu
17 hours ago by yura.grabovska ▴ 670
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645
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Comment: Comment: best practices for integrating
1 day ago by yura.grabovska ▴ 670
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1
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335
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Comment: Comment: Could Anyone Help Me with Seurat code
6 days ago by yura.grabovska ▴ 670
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1
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181
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Comment: Comment: Unable to link peaks to genes for multiomics data
7 days ago by yura.grabovska ▴ 670
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218
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Comment: Comment: Need help with fgsea
7 days ago by yura.grabovska ▴ 670
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2
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218
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Comment: Comment: Need help with fgsea
7 days ago by yura.grabovska ▴ 670
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335
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Comment: Comment: Could Anyone Help Me with Seurat code
7 days ago by yura.grabovska ▴ 670
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652
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
7 days ago by yura.grabovska ▴ 670
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652
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
11 days ago by yura.grabovska ▴ 670
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652
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Comment: Comment: Seeking a tool for enrichment of a small list of ranked genes
12 days ago by yura.grabovska ▴ 670
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294
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Comment: Comment: I encountered some problem while using bitr() for gene ID transversion.
15 days ago by yura.grabovska ▴ 670
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389
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Comment: Comment: Create Oncoprint with ggplot2
15 days ago by yura.grabovska ▴ 670
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3
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481
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What's going on with Ensembl?
biomaRt ensembl
updated 19 days ago by ▴ 170 • written 5 weeks ago by ▴ 670
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380
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Comment: Comment: How to install deconstructSigs in R
20 days ago by yura.grabovska ▴ 670
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1
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460
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Comment: Comment: Changing label geom_text in ggplot
20 days ago by yura.grabovska ▴ 670
2
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1
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460
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Answer: Answer: Changing label geom_text in ggplot
20 days ago by yura.grabovska ▴ 670
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412
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Answer: Answer: TCGA Methylation Beta and Gene Expression Help
21 days ago by yura.grabovska ▴ 670
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300
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Comment: Comment: cellranger error - insufficient disc space allocated to cellranger
23 days ago by yura.grabovska ▴ 670
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1
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275
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Comment: Comment: Pigeon make-seurat produces empty output
22 days ago by yura.grabovska ▴ 670
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286
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Answer: Answer: fail to download data from seurat
4 weeks ago by yura.grabovska ▴ 670
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1
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244
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Comment: Comment: xCell output and immune cell ratio
4 weeks ago by yura.grabovska ▴ 670
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1
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378
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Answer: Answer: getMappedEntrezIDs from missmethyl package R
5 weeks ago by yura.grabovska ▴ 670
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1
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342
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Comment: Comment: Feature Selection for DNA methylation data
5 weeks ago by yura.grabovska ▴ 670
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551
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Comment: Comment: Differential expression analysis between groups with varying cell proportions
6 weeks ago by yura.grabovska ▴ 670
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551
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Comment: Comment: Differential expression analysis between groups with varying cell proportions
6 weeks ago by yura.grabovska ▴ 670
1
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1
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564
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
6 weeks ago by yura.grabovska ▴ 670
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216
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Comment: Comment: Good Dotplots for homogenous data (Seurat)
6 weeks ago by yura.grabovska ▴ 670
1
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1
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564
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Comment: Comment: Gene set enrichment analysis gives a lot of "significant pathways"
6 weeks ago by yura.grabovska ▴ 670
1
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1
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291
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Comment: Comment: Cell cluster that mainly consists of doublet.
6 weeks ago by yura.grabovska ▴ 670
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232
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Comment: Comment: CCLE Cell lines annotations
6 weeks ago by yura.grabovska ▴ 670
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1
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418
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Comment: Comment: 0-based or 1-based file format using R pipeline?
6 weeks ago by yura.grabovska ▴ 670
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1
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418
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Comment: Comment: 0-based or 1-based file format using R pipeline?
6 weeks ago by yura.grabovska ▴ 670
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1
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283
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Answer: Answer: Appropriate minimum gene set size for gene set enrichment analysis
7 weeks ago by yura.grabovska ▴ 670
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1
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247
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Seurat Xenium QC
R Xenium spatial Seurat
updated 7 weeks ago by 5.9k • written 7 weeks ago by ▴ 670
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351
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Comment: Comment: cnvpytor run problem
7 weeks ago by yura.grabovska ▴ 670
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1
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351
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Answer: Answer: cnvpytor run problem
7 weeks ago by yura.grabovska ▴ 670
1
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536
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Answer: Answer: PCA for count data
7 weeks ago by yura.grabovska ▴ 670
1
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0
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370
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Comment: Comment: Removing features from RNA assay in seurat
7 weeks ago by yura.grabovska ▴ 670
1
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1
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370
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Comment: Comment: Removing features from RNA assay in seurat
7 weeks ago by yura.grabovska ▴ 670
1
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0
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1.8k
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Comment: Comment: Center multiple pheatmap
7 weeks ago by yura.grabovska ▴ 670
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1
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1.8k
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Comment: Comment: Center multiple pheatmap
7 weeks ago by yura.grabovska ▴ 670
2
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397
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Comment: Comment: creat histogram in R
7 weeks ago by yura.grabovska ▴ 670
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0
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247
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Comment: Comment: Course: Single-cell RNA-seq analysis with R/Bioconductor
8 weeks ago by yura.grabovska ▴ 670
1
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1
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384
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Comment: Comment: GSVA with a genelist on a "per-cluster" basis
8 weeks ago by yura.grabovska ▴ 670
1
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384
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Answer: Answer: GSVA with a genelist on a "per-cluster" basis
8 weeks ago by yura.grabovska ▴ 670
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418
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Comment: Comment: Error function vst in DESeq2
8 weeks ago by yura.grabovska ▴ 670
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392
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Answer: Answer: Using scRNA-seq to draw concrete evidence about transitional cluster
8 weeks ago by yura.grabovska ▴ 670
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747
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Answer: Answer: Error in pheatmap 'Error in hclust(d, method = method) : must have n >= 2 object
8 weeks ago by yura.grabovska ▴ 670
134 results • Page 1 of 3
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