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Comment: Comment: creat histogram in R
9 weeks ago by yura.grabovska ▴ 690
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256
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Comment: Comment: Course: Single-cell RNA-seq analysis with R/Bioconductor
9 weeks ago by yura.grabovska ▴ 690
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1
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407
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Comment: Comment: GSVA with a genelist on a "per-cluster" basis
9 weeks ago by yura.grabovska ▴ 690
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407
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Answer: Answer: GSVA with a genelist on a "per-cluster" basis
9 weeks ago by yura.grabovska ▴ 690
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0
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436
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Comment: Comment: Error function vst in DESeq2
9 weeks ago by yura.grabovska ▴ 690
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1
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400
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Answer: Answer: Using scRNA-seq to draw concrete evidence about transitional cluster
9 weeks ago by yura.grabovska ▴ 690
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757
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Answer: Answer: Error in pheatmap 'Error in hclust(d, method = method) : must have n >= 2 object
10 weeks ago by yura.grabovska ▴ 690
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248
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Answer: Answer: filter genes for differential gene expression
10 weeks ago by yura.grabovska ▴ 690
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0
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173
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CODEX/Phenocycler -> QuPath -> Seurat pipeline basic help needed
QuPath CODEX Seurat Phenocycler
10 weeks ago by yura.grabovska ▴ 690
2
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1
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874
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Understanding behaviour of SCTransform in Seurat
Seurat scRNASeq normalization
updated 11 weeks ago by • 0 • written 6 months ago by ▴ 690
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1
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528
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
11 weeks ago by yura.grabovska ▴ 690
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1
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528
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
11 weeks ago by yura.grabovska ▴ 690
0
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6
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528
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Best practice for gene ontology/pathway/geneset enrichment in 10x data
R Seurat scRNA
updated 11 weeks ago by ★ 18k • written 11 weeks ago by ▴ 690
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0
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599
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Comment: Comment: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
11 weeks ago by yura.grabovska ▴ 690
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1
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1.1k
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Comment: Comment: Can't reproduce harmony results in Seurat
3 months ago by yura.grabovska ▴ 690
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1
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1.1k
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Comment: Comment: Can't reproduce harmony results in Seurat
3 months ago by yura.grabovska ▴ 690
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0
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599
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Answer: Answer: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
3 months ago by yura.grabovska ▴ 690
0
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0
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611
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Comment: Comment: Weird outcomes from employing NMF on scRNA-seq data
3 months ago by yura.grabovska ▴ 690
1
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0
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1.1k
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Comment: Comment: Can't reproduce harmony results in Seurat
3 months ago by yura.grabovska ▴ 690
0
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1
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1.1k
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Answer: Answer: Can't reproduce harmony results in Seurat
3 months ago by yura.grabovska ▴ 690
3
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0
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378
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Comment: Comment: Weird looking volcano plot
3 months ago by yura.grabovska ▴ 690
1
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2
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611
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Answer: Answer: Weird outcomes from employing NMF on scRNA-seq data
3 months ago by yura.grabovska ▴ 690
1
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0
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521
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Answer: Answer: Statistics of methylation experiments
3 months ago by yura.grabovska ▴ 690
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0
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416
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Answer: Answer: Using findmarker of seurat with different test.use but getting the same resulat.
3 months ago by yura.grabovska ▴ 690
1
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0
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757
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Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
3 months ago by yura.grabovska ▴ 690
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0
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481
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Comment: Comment: How to convert h5ad object to rds object without raw counts?
4 months ago by yura.grabovska ▴ 690
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1
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481
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Comment: Comment: How to convert h5ad object to rds object without raw counts?
4 months ago by yura.grabovska ▴ 690
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0
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508
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Comment: Comment: Selecting top signature score from signatures with different distributions
4 months ago by yura.grabovska ▴ 690
1
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0
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499
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Answer: Answer: Integration of scRNA-seq datasets from different tissues
4 months ago by yura.grabovska ▴ 690
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1
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508
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Comment: Comment: Selecting top signature score from signatures with different distributions
4 months ago by yura.grabovska ▴ 690
0
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1
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508
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Comment: Comment: Selecting top signature score from signatures with different distributions
4 months ago by yura.grabovska ▴ 690
2
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6
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508
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Selecting top signature score from signatures with different distributions
R classification distributions
updated 4 months ago by 4.7k • written 4 months ago by ▴ 690
1
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0
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868
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Answer: Answer: How to Read .CEL files in R-studio?
4 months ago by yura.grabovska ▴ 690
0
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5
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449
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Suggestions for resource for running R training
R environments training
updated 4 months ago by ★ 2.1k • written 4 months ago by ▴ 690
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0
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449
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Comment: Comment: Suggestions for resource for running R training
4 months ago by yura.grabovska ▴ 690
0
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1
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424
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Comment: Comment: Help with cnet plot for customize pathway from MSigDb
5 months ago by yura.grabovska ▴ 690
0
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0
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449
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Answer: Answer: Help with heatmaps
5 months ago by yura.grabovska ▴ 690
1
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0
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580
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Comment: Comment: Issue with converting Affy IDs to gene IDs/symbols
5 months ago by yura.grabovska ▴ 690
0
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0
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221
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Clustering single-cell CNV data
R clustering infercnv CNV scRNA
5 months ago by yura.grabovska ▴ 690
1
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1
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580
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Comment: Comment: Issue with converting Affy IDs to gene IDs/symbols
5 months ago by yura.grabovska ▴ 690
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1
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512
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Comment: Comment: adjusting pheatmap based on common genes
5 months ago by yura.grabovska ▴ 690
0
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0
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751
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Answer: Answer: scRNA-seq: Do people eliminate housekeeping genes for the sake of increasing alg
5 months ago by yura.grabovska ▴ 690
2
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1
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580
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Answer: Answer: Issue with converting Affy IDs to gene IDs/symbols
5 months ago by yura.grabovska ▴ 690
2
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2
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512
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Answer: Answer: adjusting pheatmap based on common genes
5 months ago by yura.grabovska ▴ 690
1
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0
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410
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Comment: Comment: Help with R programming assignment
5 months ago by yura.grabovska ▴ 690
0
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0
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783
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Comment: Comment: Differential analysis of enrichment results
5 months ago by yura.grabovska ▴ 690
0
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1
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783
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Answer: Answer: Differential analysis of enrichment results
5 months ago by yura.grabovska ▴ 690
2
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0
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782
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Answer: Answer: Change the layout of the Venn diagram
5 months ago by yura.grabovska ▴ 690
0
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1
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887
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
5 months ago by yura.grabovska ▴ 690
1
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1
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425
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Answer: Answer: Help with complex Volcano Plot
5 months ago by yura.grabovska ▴ 690
141 results • Page 2 of 3
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