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Interpreting cNMF with 2 equivalent best ranks
python cNMF
5 months ago by yura.grabovska ▴ 690
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0
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480
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Comment: Comment: Findind the annotation file of the Illumina Infinium HumanMethylation450k array
5 months ago by yura.grabovska ▴ 690
2
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1
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480
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Answer: Answer: Findind the annotation file of the Illumina Infinium HumanMethylation450k array
5 months ago by yura.grabovska ▴ 690
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2
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887
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
5 months ago by yura.grabovska ▴ 690
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1
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887
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Answer: Answer: Before doing pseudobulk, should we get rid of genes that are only expressed in a
5 months ago by yura.grabovska ▴ 690
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0
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389
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Answer: Answer: Statistical test or method to test relationship between nearby genes and CpG sit
5 months ago by yura.grabovska ▴ 690
5
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0
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471
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Answer: Answer: Merged analysis of microarray datasets using R
5 months ago by yura.grabovska ▴ 690
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1
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1.4k
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Answer: Answer: Filtering seurat object
5 months ago by yura.grabovska ▴ 690
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1
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757
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Answer: Answer: Calling variants/SNP for single-cell RNA-seq data
5 months ago by yura.grabovska ▴ 690
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1
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1.4k
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Answer: Answer: Errors with GSEA using clusterProfiler
5 months ago by yura.grabovska ▴ 690
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1
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1.4k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by yura.grabovska ▴ 690
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1
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1.4k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by yura.grabovska ▴ 690
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2
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1.4k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by yura.grabovska ▴ 690
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0
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384
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Answer: Answer: Pathway and associated gene coordinates
5 months ago by yura.grabovska ▴ 690
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1
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1.4k
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Answer: Answer: Errors with GSEA using clusterProfiler
5 months ago by yura.grabovska ▴ 690
3
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1
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708
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Answer: Answer: Open the Seurat count matrix in RStudio
5 months ago by yura.grabovska ▴ 690
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0
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344
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Answer: Answer: GSVA Setup
5 months ago by yura.grabovska ▴ 690
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0
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646
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Comment: Comment: QC filtering for 10x Single Cell Gene Expression Flex Fixed RNA Profiling
6 months ago by yura.grabovska ▴ 690
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3
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646
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QC filtering for 10x Single Cell Gene Expression Flex Fixed RNA Profiling
10x Seurat scRNA-Seq
6 months ago by yura.grabovska ▴ 690
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0
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445
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Answer: Answer: RNA seq
updated 6 months ago by 44k • written 6 months ago by ▴ 690
1
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1
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714
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Comment: Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
7 months ago by yura.grabovska ▴ 690
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1
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714
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Answer: Answer: Can 5' and 3' scRNAseq be processed with the same pipeline?
7 months ago by yura.grabovska ▴ 690
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1
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804
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Seurat v5 and how to correctly integrate across multiple experiments
Seurat scRNA R
updated 7 months ago by ★ 3.0k • written 7 months ago by ▴ 690
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1
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2.5k
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Answer: Answer: Confusing results from FindConservedMarkers in Seurat
12 months ago by yura.grabovska ▴ 690
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1
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703
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Answer: Answer: Extracting GSEA gene rankings from gseaResult object
12 months ago by yura.grabovska ▴ 690
1
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1
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612
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Dealing with very large gene-lists in GSEA
R fgsea GSEA
updated 20 months ago by ★ 1.8k • written 20 months ago by ▴ 690
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0
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723
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Answer: Answer: boxplot issue
updated 20 months ago by 44k • written 20 months ago by ▴ 690
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0
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670
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Answer: Answer: heatmap issue
20 months ago by yura.grabovska ▴ 690
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0
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446
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How to format matrix with negative values for NMF in R
nmf R matrix
22 months ago by yura.grabovska ▴ 690
0
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0
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534
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Most appropriate method to analysing multi-plate single concentration drug screening
statistics screening drug
2.0 years ago by yura.grabovska ▴ 690
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0
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390
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SinEx DB 2.0 local version
SEG exons genes
2.2 years ago by yura.grabovska ▴ 690
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0
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355
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Annotate peptide sequence with source exon
protein R biomaRt
updated 2.3 years ago by 148k • written 2.3 years ago by ▴ 690
7
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2
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1.9k
views
Retrieve and count variable barcodes from pooled sequencing fastq
NGS fastq barcodes
updated 3.0 years ago by 8.7k • written 3.1 years ago by ▴ 690
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0
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793
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Comment: Comment: Automatically annotate drugs for their targets
3.1 years ago by yura.grabovska ▴ 690
1
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2
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793
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Automatically annotate drugs for their targets
drugs annotation
updated 3.1 years ago by ★ 2.2k • written 3.1 years ago by ▴ 690
0
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1
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1.3k
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Comment: C: Is a paired Wilcoxon test appropriate for analysis of CRISPR gene knock-out scre
4.2 years ago by yura.grabovska ▴ 690
6
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2
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1.3k
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Is a paired Wilcoxon test appropriate for analysis of CRISPR gene knock-out screen counts?
R gene sequencing
updated 4.2 years ago by 86k • written 4.2 years ago by ▴ 690
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1
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5.6k
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Comment: C: Using limma to find differentially methylated probes across clusters
7.5 years ago by yura.grabovska ▴ 690
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1
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2.5k
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Comment: C: minfi out of band probes
7.5 years ago by yura.grabovska ▴ 690
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1
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2.5k
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Answer: A: minfi out of band probes
7.5 years ago by yura.grabovska ▴ 690
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4
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5.6k
views
Using limma to find differentially methylated probes across clusters
R methylation limma contrasts
7.5 years ago by yura.grabovska ▴ 690
141 results • Page 3 of 3
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