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Comment: C: Motif search on a DNA sequence in a gff file (ipdSummary output)
4.4 years ago by gabri ▴ 60
3
votes
3
replies
1.2k
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Motif search on a DNA sequence in a gff file (ipdSummary output)
gff motif ipdSummary bash python
updated 4.4 years ago by 21k • written 4.4 years ago by ▴ 60
4
votes
4
replies
5.5k
views
bedtools, merge function: avoid merging intervals if separated by a single base
bedtools merge single_base_separation
updated 4.8 years ago by ▴ 10 • written 5.9 years ago by ▴ 60
3
votes
3
replies
1.7k
views
Software to identify microsatellites, minisatellites and satellites in a plant genome
genome satellite minisatellites microsatellites
updated 5.0 years ago by ▴ 50 • written 6.4 years ago by ▴ 60
0
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1
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1.7k
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How to annotate LTR-retrotransposons at lineage level using LTR-digest gff output based on hmms domains
LTR-retrotransposons lineage LTR-digest
updated 5.4 years ago by • 0 • written 6.4 years ago by ▴ 60
0
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2
replies
3.4k
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SSPACE-LongRead, PBjelly2 and OPERA-LG comparison
scaffolding assembly genome pacbio next-gen
updated 5.7 years ago by ★ 2.2k • written 7.1 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Find methylated motifs in a plant genome from KineticsTool gff output
methylation motif KineticsTool plant PacBio
6.1 years ago by gabri ▴ 60
7
votes
9
replies
5.2k
views
Simple alternatives for the program Circos
Circos scaffolds chromosomes circular picture
updated 6.2 years ago by 164k • written 6.2 years ago by ▴ 60
0
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0
replies
5.2k
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Comment: C: Simple alternatives for the program Circos
6.2 years ago by gabri ▴ 60
0
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2
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5.2k
views
Comment: A: Simple alternatives for the program Circos
6.2 years ago by gabri ▴ 60
0
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0
replies
1.5k
views
HelitronScanner running time
HelitronScanner Helitron running time
6.4 years ago by gabri ▴ 60
0
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0
replies
2.8k
views
Training GeneMark-ES: Data format error; gmhmme3 : warning, evidence_training.gff line ignored
GeneMark-ES GFF evidence training
6.4 years ago by gabri ▴ 60
10
votes
13
replies
2.2k
views
Count the sum of molecular markers and the respective centimorgan range from a list a sequences
excel text manipulation python perl
6.4 years ago by gabri ▴ 60
1
vote
0
replies
2.2k
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Comment: C: Remove duplicates in a Excel table summing values of associated cells
6.4 years ago by gabri ▴ 60
0
votes
1
reply
2.2k
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Comment: C: Remove duplicates in a Excel table summing values of associated cells
6.4 years ago by gabri ▴ 60
0
votes
0
replies
2.2k
views
Comment: C: Remove duplicates in a Excel table summing values of associated cells
6.4 years ago by gabri ▴ 60
5
votes
4
replies
3.2k
views
PacBio methylation information in bam file
PacBio methylation bam samtools
6.5 years ago by gabri ▴ 60
0
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0
replies
3.2k
views
Comment: A: PacBio methylation information in bam file
6.5 years ago by gabri ▴ 60
0
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0
replies
3.2k
views
Comment: C: PacBio methylation information in bam file
6.5 years ago by gabri ▴ 60
0
votes
0
replies
1.2k
views
RepeatMasker: considering only the matches with a specific length
repeatmasker reference alignment length
updated 7.3 years ago by 20 • written 7.3 years ago by ▴ 60
0
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0
replies
2.4k
views
Comment: C: Estimate the genome heterozygosity from a PacBio dataset
7.4 years ago by gabri ▴ 60
1
vote
2
replies
2.4k
views
Estimate the genome heterozygosity from a PacBio dataset
Heterozygosity PacBio Genome
updated 7.4 years ago by 101k • written 7.4 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Comment: C: Assemble genomes over 100 Mb with the portal SMRT Analysis Software v4.0
7.4 years ago by gabri ▴ 60
1
vote
2
replies
1.5k
views
Assemble genomes over 100 Mb with the portal SMRT Analysis Software v4.0
PacBio Assembly SMRT Analysis Software Genome size
updated 7.4 years ago by ▴ 240 • written 7.4 years ago by ▴ 60
0
votes
0
replies
3.2k
views
Comment: C: Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
7.4 years ago by gabri ▴ 60
0
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0
replies
3.2k
views
Comment: C: Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
7.4 years ago by gabri ▴ 60
8
votes
4
replies
3.2k
views
Use PacBio FASTQ reads to polish\correct a PacBio Fasta assembly without Quiver
PacBio Assembly Polish Correct FASTQ
updated 7.4 years ago by ▴ 190 • written 7.4 years ago by ▴ 60
27 results • Page 1 of 1
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