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Error in ChIPQC(samples) : Unable to process. Each bam file must be associated with at most one peakset.
ChIP-Seq
updated 2.2 years ago by • 0 • written 3.9 years ago by ▴ 60
1
vote
1
reply
623
views
How to calculate all possible chromatin interactions in a given sample?
Hi-C ChIAPET
updated 2.8 years ago by ★ 1.9k • written 2.8 years ago by ▴ 60
0
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0
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2.1k
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Comment: Comment: How to get parameter estimation r and p for Negative Binomial distribution using
3.2 years ago by bioinfo89 ▴ 60
0
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5
replies
2.1k
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How to get parameter estimation r and p for Negative Binomial distribution using R?
R
updated 3.2 years ago by 85k • written 3.2 years ago by ▴ 60
0
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1
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2.1k
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Comment: Comment: How to get parameter estimation r and p for Negative Binomial distribution using
3.2 years ago by bioinfo89 ▴ 60
0
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0
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3.1k
views
Comment: Comment: Which R function can be used for intersection of genomic coordinates from one fi
3.4 years ago by bioinfo89 ▴ 60
3
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4
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3.1k
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Which R function can be used for intersection of genomic coordinates from one file and check if the coordinates are within a specific range?
coordinates R Genomic
3.4 years ago by bioinfo89 ▴ 60
0
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1
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1.1k
views
Express v_1.5.1 Error: Transcript IDs from MultiFASTA do not match with (SAM/BAM) file.
rna-seq read counts
updated 3.8 years ago by 5.9k • written 3.8 years ago by ▴ 60
0
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1
reply
969
views
Comment: C: ChIA-PET2 ERROR: The input file is neither a BAM file nor a SAM file.
3.9 years ago by bioinfo89 ▴ 60
0
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0
replies
969
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Comment: C: ChIA-PET2 ERROR: The input file is neither a BAM file nor a SAM file.
3.9 years ago by bioinfo89 ▴ 60
0
votes
4
replies
969
views
ChIA-PET2 ERROR: The input file is neither a BAM file nor a SAM file.
Chiapet
3.9 years ago by bioinfo89 ▴ 60
0
votes
0
replies
1.9k
views
Comment: C: Chia-pipe cannot find the module pigz
4.2 years ago by bioinfo89 ▴ 60
0
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1
reply
1.9k
views
Comment: C: Chia-pipe cannot find the module pigz
4.2 years ago by bioinfo89 ▴ 60
0
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0
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1.9k
views
Comment: C: Chia-pipe cannot find the module pigz
4.2 years ago by bioinfo89 ▴ 60
0
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1
reply
1.9k
views
Comment: C: Chia-pipe cannot find the module pigz
4.2 years ago by bioinfo89 ▴ 60
0
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1
reply
1.9k
views
Comment: C: Chia-pipe cannot find the module pigz
4.2 years ago by bioinfo89 ▴ 60
0
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2
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1.9k
views
Comment: C: Chia-pipe cannot find the module pigz
4.2 years ago by bioinfo89 ▴ 60
1
vote
13
replies
1.9k
views
Chia-pipe cannot find the module pigz
next-gen ChIP-Seq ChIA-PET
updated 4.2 years ago by 44k • written 4.2 years ago by ▴ 60
0
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0
replies
698
views
What information does ChIA-PET2 tool trim statistics terms provide exactly?
ChIP-Seq
updated 4.5 years ago by 5.9k • written 4.5 years ago by ▴ 60
2
votes
2
replies
991
views
ChIA-PET2: Error: Don't have enough confident interactions to learn the model.
ChIP-Seq
updated 4.6 years ago by 5.9k • written 4.7 years ago by ▴ 60
0
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1
reply
3.8k
views
Comment: C: bedtools complement error
updated 5.5 years ago by 44k • written 5.5 years ago by ▴ 60
0
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1
reply
3.3k
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Comment: C: Where to get homopolymer annotation for human genome ?
5.5 years ago by bioinfo89 ▴ 60
7
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6
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4.9k
views
How to calculate average depth for each Amplicon in targeted amplicon sequencing?
next-gen bedtools
updated 5.5 years ago by ▴ 10 • written 6.6 years ago by ▴ 60
2
votes
1
reply
877
views
How to consider/get the g. positions for variants in introns?
SNP
updated 5.7 years ago by 16k • written 5.7 years ago by ▴ 60
7
votes
13
replies
12k
views
Merge vcf files with multiple samples into one vcf with all variants
SNP vcf
updated 5.7 years ago by 12k • written 6.0 years ago by ▴ 60
0
votes
0
replies
12k
views
Comment: C: Merge vcf files with multiple samples into one vcf with all variants
updated 6.0 years ago by 47k • written 6.0 years ago by ▴ 60
0
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1
reply
12k
views
Comment: C: Merge vcf files with multiple samples into one vcf with all variants
updated 6.0 years ago by 47k • written 6.0 years ago by ▴ 60
0
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0
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12k
views
Comment: C: Merge vcf files with multiple samples into one vcf with all variants
6.0 years ago by bioinfo89 ▴ 60
0
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3
replies
12k
views
Comment: C: How to merge multiple VCF files (each has multiple samples genotype) from differ
6.0 years ago by bioinfo89 ▴ 60
0
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0
replies
1.9k
views
Comment: C: How to convert chrM variants from NC_001807.4 version coordinates to NC_012920.1
6.0 years ago by bioinfo89 ▴ 60
1
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2
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1.9k
views
How to convert chrM variants from NC_001807.4 version coordinates to NC_012920.1 coordinates?
SNP Assembly
6.0 years ago by bioinfo89 ▴ 60
0
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0
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4.0k
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Comment: C: VCF validation error:Ref allele mismatch?
6.0 years ago by bioinfo89 ▴ 60
0
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1
reply
4.0k
views
Comment: C: VCF validation error:Ref allele mismatch?
6.1 years ago by bioinfo89 ▴ 60
0
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1
reply
4.0k
views
Comment: C: VCF validation error:Ref allele mismatch?
updated 6.1 years ago by 44k • written 6.1 years ago by ▴ 60
0
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1
reply
4.0k
views
Comment: C: VCF validation error:Ref allele mismatch?
updated 6.1 years ago by 44k • written 6.1 years ago by ▴ 60
0
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0
replies
4.0k
views
Comment: C: VCF validation error:Ref allele mismatch?
updated 6.1 years ago by 16k • written 6.1 years ago by ▴ 60
0
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1
reply
4.0k
views
Comment: C: VCF validation error:Ref allele mismatch?
6.1 years ago by bioinfo89 ▴ 60
0
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1
reply
4.0k
views
Comment: C: VCF validation error:Ref allele mismatch?
6.1 years ago by bioinfo89 ▴ 60
2
votes
13
replies
4.0k
views
VCF validation error:Ref allele mismatch?
SNP assembly genome
updated 6.1 years ago by 16k • written 6.1 years ago by ▴ 60
0
votes
1
reply
3.8k
views
Comment: C: How to integrate GTEx data for variant annotation to understand the tissue speci
6.1 years ago by bioinfo89 ▴ 60
1
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1
reply
3.8k
views
Comment: C: How to integrate GTEx data for variant annotation to understand the tissue speci
6.1 years ago by bioinfo89 ▴ 60
1
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1
reply
4.7k
views
Comment: C: Retrieve genbank viral genomes
updated 6.3 years ago by 5.9k • written 6.3 years ago by ▴ 60
0
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0
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3.8k
views
Comment: C: How to integrate GTEx data for variant annotation to understand the tissue speci
6.3 years ago by bioinfo89 ▴ 60
4
votes
8
replies
3.8k
views
How to integrate GTEx data for variant annotation to understand the tissue specific expression?
SNP next-gen
updated 6.3 years ago by 7.6k • written 6.3 years ago by ▴ 60
0
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0
replies
2.6k
views
Comment: C: How to filter variant calls based on specific reference and alternate allele fre
6.4 years ago by bioinfo89 ▴ 60
0
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0
replies
2.6k
views
Comment: C: How to filter variant calls based on specific reference and alternate allele fre
6.4 years ago by bioinfo89 ▴ 60
0
votes
4
replies
2.6k
views
How to filter variant calls based on specific reference and alternate allele frequency ratio during variations calling?
SNP vcf
updated 6.4 years ago by 16k • written 6.4 years ago by ▴ 60
1
vote
2
replies
3.1k
views
Answer: A: How to extract unique paired end reads from a merged BAM file?
updated 6.4 years ago by 5.9k • written 6.6 years ago by ▴ 60
0
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1
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3.1k
views
Comment: C: How to extract unique paired end reads from a merged BAM file?
updated 6.4 years ago by 5.9k • written 6.6 years ago by ▴ 60
11
votes
16
replies
3.1k
views
How to extract unique paired end reads from a merged BAM file?
RNA-Seq
updated 6.4 years ago by 5.9k • written 6.6 years ago by ▴ 60
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