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2
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6
replies
2.1k
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SeqIO.parse reading a 200bp FASTA sequence as 132bp
Biopython
updated 7.3 years ago by 6.0k • written 7.4 years ago by ▴ 30
0
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0
replies
9.8k
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Comment: C: Show Progress (Bar?) For Blast+ Query
7.4 years ago by rmartson ▴ 30
4
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10
replies
2.9k
views
Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat
updated 7.4 years ago by 47k • written 7.4 years ago by ▴ 30
0
votes
1
reply
2.9k
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Comment: C: Which database should I be downloading to setup local BLAST and BLAT to find hit
7.4 years ago by rmartson ▴ 30
0
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2
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3.6k
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Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
7.4 years ago by rmartson ▴ 30
0
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0
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3.6k
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Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
7.4 years ago by rmartson ▴ 30
0
votes
0
replies
3.6k
views
Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
7.4 years ago by rmartson ▴ 30
3
votes
9
replies
3.6k
views
Is there a more efficient way of checking multiple sequences for how many hits they have in the human genome?
Biopython Blast
updated 7.4 years ago by 36k • written 7.4 years ago by ▴ 30
0
votes
0
replies
1.6k
views
Comment: C: How to efficiently find any instances of two hits (LTRs) in close proximity to o
7.4 years ago by rmartson ▴ 30
1
vote
2
replies
1.6k
views
How to efficiently find any instances of two hits (LTRs) in close proximity to one another in the genome? (Finding full-length proviruses)
Biopython Blast
7.4 years ago by rmartson ▴ 30
0
votes
0
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3.6k
views
Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
7.4 years ago by rmartson ▴ 30
0
votes
0
replies
2.0k
views
Comment: C: Is it possible to download BLAT results as actual sequences i.e. in genbank or f
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
2.0k
views
Comment: C: Is it possible to download BLAT results as actual sequences i.e. in genbank or f
7.4 years ago by rmartson ▴ 30
0
votes
0
replies
2.0k
views
Comment: C: Is it possible to download BLAT results as actual sequences i.e. in genbank or f
7.4 years ago by rmartson ▴ 30
1
vote
0
replies
2.1k
views
Comment: C: SeqIO.parse reading a 200bp FASTA sequence as 132bp
7.4 years ago by rmartson ▴ 30
0
votes
6
replies
2.0k
views
Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
2.1k
views
Comment: C: SeqIO.parse reading a 200bp FASTA sequence as 132bp
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
2.1k
views
Comment: C: SeqIO.parse reading a 200bp FASTA sequence as 132bp
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
1.5k
views
Comment: C: Where do you actually download UCSC BLAT output?
7.4 years ago by rmartson ▴ 30
0
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3
replies
1.5k
views
Where do you actually download UCSC BLAT output?
blat ucsc blast
7.4 years ago by rmartson ▴ 30
0
votes
0
replies
1.9k
views
Comment: C: How to group BLAST results by ID and then check the difference in an attribute l
7.4 years ago by rmartson ▴ 30
0
votes
4
replies
1.9k
views
How to group BLAST results by ID and then check the difference in an attribute like sequence length for every possible pair within a group?
Biopython BLAST
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
1.9k
views
Comment: C: How to group BLAST results by ID and then check the difference in an attribute l
7.4 years ago by rmartson ▴ 30
1
vote
5
replies
3.3k
views
How to use for loops to compare each DNA sequence in one file to each sequence in another file?
Biopython BLAST
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
3.3k
views
Comment: C: How to use for loops to compare each DNA sequence in one file to each sequence i
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
3.3k
views
Comment: C: How to use for loops to compare each DNA sequence in one file to each sequence i
7.4 years ago by rmartson ▴ 30
0
votes
0
replies
3.6k
views
Comment: C: Extracting 100bp flanking sites around aligned sequences from BLAST results usin
7.4 years ago by rmartson ▴ 30
0
votes
1
reply
3.6k
views
Comment: C: Extracting 100bp flanking sites around aligned sequences from BLAST results usin
7.4 years ago by rmartson ▴ 30
0
votes
2
replies
3.6k
views
Comment: C: Extracting 100bp flanking sites around aligned sequences from BLAST results usin
7.4 years ago by rmartson ▴ 30
3
votes
8
replies
3.6k
views
Extracting 100bp flanking sites around aligned sequences from BLAST results using Biopython or Bioperl?
Biopython Bioperl
updated 7.4 years ago by 21k • written 7.4 years ago by ▴ 30
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