Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.7k
views
Answer: A: Question about HOMER peak annotation to some features. Customize gff3?
3.8 years ago by nanoide ▴ 120
0
votes
2
replies
1.7k
views
Question about HOMER peak annotation to some features. Customize gff3?
ChIP-Seq HOMER annotation
3.8 years ago by nanoide ▴ 120
0
votes
1
reply
1.1k
views
Comment: C: Recommendations on FAIRE-seq/ATAC-seq optimal coverage for large genome
4.0 years ago by nanoide ▴ 120
3
votes
3
replies
1.1k
views
Recommendations on FAIRE-seq/ATAC-seq optimal coverage for large genome
ATAC-seq FAIRE-seq Coverage
4.0 years ago by nanoide ▴ 120
10
votes
9
replies
1.6k
views
Help interpretating DESeq2 output
Deseq2 Fold-Change RNA-seq
updated 14 months ago by 44k • written 4.0 years ago by ▴ 120
1
vote
0
replies
1.6k
views
Comment: C: Help interpretating DESeq2 output
4.0 years ago by nanoide ▴ 120
0
votes
1
reply
1.6k
views
Comment: C: Help interpretating DESeq2 output
4.0 years ago by nanoide ▴ 120
0
votes
1
reply
1.6k
views
Comment: C: Help interpretating DESeq2 output
4.0 years ago by nanoide ▴ 120
0
votes
0
replies
934
views
Trying to compile the software seqoutbias with cargo within a conda environment
rust cargo seqoutbias compilation
4.1 years ago by nanoide ▴ 120
0
votes
0
replies
952
views
Some question on HGAP installation and use
genome assembly HGAP PacBio
4.4 years ago by nanoide ▴ 120
2
votes
3
replies
1.5k
views
How to add a flag to a sam/bam file
ATAC-seq samtools flag filtering
updated 4.7 years ago by 20 • written 4.8 years ago by ▴ 120
0
votes
1
reply
1.5k
views
Comment: C: How to add a flag to a sam/bam file
4.8 years ago by nanoide ▴ 120
0
votes
0
replies
5.1k
views
Comment: C: ATAC-seq TSS profile plot interpretation
5.0 years ago by nanoide ▴ 120
0
votes
1
reply
5.1k
views
Comment: C: ATAC-seq TSS profile plot interpretation
5.0 years ago by nanoide ▴ 120
0
votes
1
reply
5.1k
views
Comment: C: ATAC-seq V-plot interpretation
5.0 years ago by nanoide ▴ 120
9
votes
9
replies
5.1k
views
ATAC-seq TSS profile plot interpretation
ATAC-seq TSS V-plot
5.0 years ago by nanoide ▴ 120
0
votes
1
reply
5.1k
views
Comment: C: ATAC-seq V-plot interpretation
5.0 years ago by nanoide ▴ 120
1
vote
1
reply
2.3k
views
HaplotypeCallerSpark How to use
snp GATK
updated 5.2 years ago by 5.9k • written 5.2 years ago by ▴ 120
0
votes
0
replies
3.4k
views
Comment: C: Merging the output of salmon for RNA-seq counting with paired-end and single-end
5.3 years ago by nanoide ▴ 120
6
votes
4
replies
3.4k
views
Merging the output of salmon for RNA-seq counting with paired-end and single-end reads simultaneously
RNA-Seq single-end paired-end salmon
5.3 years ago by nanoide ▴ 120
4
votes
0
replies
2.5k
views
Peak annotation with HOMER. Statistics with the annStats parameter
ChIP-seq HOMER annotatePeaks.pl stats
5.3 years ago by nanoide ▴ 120
0
votes
0
replies
9.2k
views
Comment: C: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
5.3 years ago by nanoide ▴ 120
19
votes
6
replies
9.2k
views
samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
ATAC-seq samtools Markduplicates
updated 5.4 years ago by ★ 2.1k • written 5.4 years ago by ▴ 120
0
votes
0
replies
9.2k
views
Comment: C: samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
5.4 years ago by nanoide ▴ 120
2
votes
2
replies
2.6k
views
Question about ChromHMM overlap enrichment
ChromHMM ChIP-Seq segmentation
updated 5.5 years ago by ▴ 130 • written 6.4 years ago by ▴ 120
0
votes
0
replies
1.3k
views
ATACseqQC factorFootprints function
ATACseqQC ATAC-seq footprint
5.5 years ago by nanoide ▴ 120
0
votes
0
replies
1.7k
views
Help filling the configuration file for the masurca assembler
illumina Assembly masurca fastqc pacbio
5.5 years ago by nanoide ▴ 120
6
votes
3
replies
2.3k
views
Question about exon/intron counting in RNA-seq dataset analysis
RNA-Seq htseq-count featureCounts
updated 5.6 years ago by 14k • written 5.6 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Comment: C: Question about exon/intron counting in RNA-seq dataset analysis
5.6 years ago by nanoide ▴ 120
1
vote
0
replies
9.8k
views
Comment: A: MACS2 --SPMR and --nolambda usage for version 2.1.2
5.6 years ago by nanoide ▴ 120
1
vote
1
reply
1.1k
views
Is it possible to control the coordinate of the peak that HOMER takes into account to annotate?
ChIP-seq macs2 peaks homer annotation
updated 5.6 years ago by ★ 18k • written 5.6 years ago by ▴ 120
0
votes
0
replies
6.5k
views
Comment: C: Running STAR aligner with paired-end and single-end reads simultaneously
5.6 years ago by nanoide ▴ 120
0
votes
1
reply
6.5k
views
Comment: A: Running STAR aligner with paired-end and single-end reads simultaneously
5.6 years ago by nanoide ▴ 120
12
votes
13
replies
6.5k
views
Running STAR aligner with paired-end and single-end reads simultaneously
STAR RNA-Seq paired-end single-end
5.6 years ago by nanoide ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: Getting motif instances corresponding to regions
5.6 years ago by nanoide ▴ 120
4
votes
1
reply
2.6k
views
Converting motif databases from meme suite to other formats
meme motif format
updated 5.6 years ago by 35k • written 5.6 years ago by ▴ 120
7
votes
4
replies
2.2k
views
Getting motif instances corresponding to regions
homer motif analysis instances regions
updated 5.6 years ago by 35k • written 5.6 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: Getting motif instances corresponding to regions
5.6 years ago by nanoide ▴ 120
0
votes
0
replies
6.5k
views
Comment: C: Running STAR aligner with paired-end and single-end reads simultaneously
5.7 years ago by nanoide ▴ 120
0
votes
1
reply
6.5k
views
Comment: C: Running STAR aligner with paired-end and single-end reads simultaneously
5.7 years ago by nanoide ▴ 120
1
vote
1
reply
5.0k
views
Comment: C: Differences between motif enrichment analysis and footprinting in the context of
5.7 years ago by nanoide ▴ 120
1
vote
0
replies
6.5k
views
Comment: A: Running STAR aligner with paired-end and single-end reads simultaneously
5.7 years ago by nanoide ▴ 120
7
votes
3
replies
5.0k
views
Differences between motif enrichment analysis and footprinting in the context of DNAse-seq/ATAC-seq
footprinting atac-seq dnase-seq motifs
updated 5.7 years ago by 12k • written 5.7 years ago by ▴ 120
0
votes
0
replies
6.5k
views
Comment: C: Running STAR aligner with paired-end and single-end reads simultaneously
5.7 years ago by nanoide ▴ 120
0
votes
0
replies
5.0k
views
Comment: C: TPKM vs FPKM
6.1 years ago by nanoide ▴ 120
10
votes
9
replies
5.0k
views
TPKM vs FPKM
RNA-Seq FPKM
updated 6.1 years ago by 85k • written 6.1 years ago by ▴ 120
0
votes
1
reply
5.0k
views
Comment: C: TPKM vs FPKM
6.1 years ago by nanoide ▴ 120
0
votes
0
replies
5.0k
views
Comment: C: TPKM vs FPKM
6.1 years ago by nanoide ▴ 120
0
votes
0
replies
1.8k
views
Comment: C: How to get regions with mapped reads
6.1 years ago by nanoide ▴ 120
0
votes
0
replies
1.8k
views
Comment: C: How to get regions with mapped reads
6.1 years ago by nanoide ▴ 120
65 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6