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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
5.8 years ago by janhuang.cn ▴ 230
0
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Comment: C: How to extract proxy SNPs using 1000G vcf for a list of SNPs
5.8 years ago by janhuang.cn ▴ 230
0
votes
5
replies
3.1k
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How to extract proxy SNPs using 1000G vcf for a list of SNPs
plink proxy SNP 1000G vcftools
updated 5.8 years ago by 11k • written 5.8 years ago by ▴ 230
5
votes
3
replies
14k
views
Fail to open file in plink
ped plink
updated 5.9 years ago by 12k • written 7.4 years ago by ▴ 230
0
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1
reply
5.0k
views
Comment: C: Illumina Human Methylation EPIC array annotation
6.0 years ago by janhuang.cn ▴ 230
0
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3
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5.0k
views
Illumina Human Methylation EPIC array annotation
DNA methylation Annotation EPIC array
updated 6.0 years ago by 8.3k • written 6.0 years ago by ▴ 230
9
votes
6
replies
13k
views
6 follow
Duplicate ID in bed file
bed duplicate id
updated 3.1 years ago by ▴ 40 • written 7.4 years ago by ▴ 230
3
votes
14
replies
15k
views
Obtain the LD matrix from a list of SNP
SNP LD
updated 6.6 years ago by 12k • written 7.4 years ago by ▴ 230
0
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8
replies
4.8k
views
Keep one SNP for duplicate SNPs
duplicate SNP
updated 7.0 years ago by 20 • written 7.3 years ago by ▴ 230
0
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0
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3.2k
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Comment: C: Infinium Methylation SNP
7.2 years ago by janhuang.cn ▴ 230
0
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1
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3.2k
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Comment: C: Infinium Methylation SNP
7.2 years ago by janhuang.cn ▴ 230
2
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6
replies
3.2k
views
Infinium Methylation SNP
SNP cpg overlap
updated 7.2 years ago by 6.6k • written 7.2 years ago by ▴ 230
3
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0
replies
3.8k
views
Comment: C: SNPs that are merged in dbSNP
7.2 years ago by janhuang.cn ▴ 230
0
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2
replies
5.5k
views
Comment: Comment: Downloading synonyms for dbSNP rsids
updated 2.7 years ago by 44k • written 7.2 years ago by ▴ 230
1
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1
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3.8k
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Comment: C: SNPs that are merged in dbSNP
7.2 years ago by janhuang.cn ▴ 230
10
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3
replies
3.8k
views
SNPs that are merged in dbSNP
SNP 1000g vcf merge
updated 7.2 years ago by 88k • written 7.2 years ago by ▴ 230
0
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0
replies
16k
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Comment: C: Extract the SNP list of a VCF file
7.2 years ago by janhuang.cn ▴ 230
0
votes
1
reply
16k
views
Comment: C: Extract the SNP list of a VCF file
7.2 years ago by janhuang.cn ▴ 230
0
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1
reply
16k
views
Comment: C: Extract the SNP list of a VCF file
7.2 years ago by janhuang.cn ▴ 230
15
votes
14
replies
16k
views
Extract the SNP list of a VCF file
VCF SNP
updated 3.2 years ago by 164k • written 7.2 years ago by ▴ 230
0
votes
1
reply
16k
views
Comment: C: Extract the SNP list of a VCF file
7.2 years ago by janhuang.cn ▴ 230
1
vote
0
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3.2k
views
Comment: C: loadling bcf2 file in plink
7.2 years ago by janhuang.cn ▴ 230
0
votes
1
reply
3.2k
views
Comment: C: loadling bcf2 file in plink
7.2 years ago by janhuang.cn ▴ 230
2
votes
4
replies
3.2k
views
loadling bcf2 file in plink
plink bcf
updated 7.2 years ago by 88k • written 7.2 years ago by ▴ 230
2
votes
1
reply
12k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
7.2 years ago by janhuang.cn ▴ 230
3
votes
5
replies
10k
views
ld matrix in plink
matrix ld
updated 7.2 years ago by ▴ 400 • written 7.4 years ago by ▴ 230
1
vote
1
reply
12k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
7.3 years ago by janhuang.cn ▴ 230
19
votes
12
replies
12k
views
Remove duplicate SNPs only based on SNP ID in bcftools
SNP duplicate bcftools
updated 3.0 years ago by ▴ 10 • written 7.3 years ago by ▴ 230
0
votes
1
reply
12k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
7.3 years ago by janhuang.cn ▴ 230
0
votes
1
reply
12k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
7.3 years ago by janhuang.cn ▴ 230
0
votes
1
reply
12k
views
Comment: C: Remove duplicate SNPs only based on SNP ID in bcftools
7.3 years ago by janhuang.cn ▴ 230
0
votes
0
replies
10k
views
Comment: C: plink calculating LD using R2 command
7.3 years ago by janhuang.cn ▴ 230
1
vote
2
replies
10k
views
plink calculating LD using R2 command
ld plink r2
updated 7.3 years ago by ▴ 280 • written 7.3 years ago by ▴ 230
0
votes
2
replies
1.9k
views
Multiple USCS_gene_name for one CpG
cpg methylation annotation
updated 3.7 years ago by • 0 • written 7.3 years ago by ▴ 230
0
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0
replies
7.2k
views
Comment: C: Editing vcf file using bcftools
7.3 years ago by janhuang.cn ▴ 230
0
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1
reply
7.2k
views
Comment: C: Editing vcf file using bcftools
7.3 years ago by janhuang.cn ▴ 230
0
votes
1
reply
7.2k
views
Comment: C: Editing vcf file using bcftools
7.3 years ago by janhuang.cn ▴ 230
0
votes
6
replies
7.2k
views
Editing vcf file using bcftools
bcftools vcf subset SNP maf
7.3 years ago by janhuang.cn ▴ 230
0
votes
1
reply
4.8k
views
Comment: C: Keep one SNP for duplicate SNPs
7.3 years ago by janhuang.cn ▴ 230
0
votes
1
reply
4.8k
views
Comment: C: Keep one SNP for duplicate SNPs
7.3 years ago by janhuang.cn ▴ 230
0
votes
2
replies
4.8k
views
Comment: C: Keep one SNP for duplicate SNPs
7.3 years ago by janhuang.cn ▴ 230
0
votes
0
replies
10k
views
Comment: C: ld matrix in plink
7.3 years ago by janhuang.cn ▴ 230
0
votes
1
reply
10k
views
Comment: C: ld matrix in plink
7.4 years ago by janhuang.cn ▴ 230
0
votes
1
reply
13k
views
Comment: C: Duplicate ID in bed file
7.4 years ago by janhuang.cn ▴ 230
0
votes
1
reply
14k
views
Comment: C: Fail to open file in plink
7.4 years ago by janhuang.cn ▴ 230
0
votes
0
replies
15k
views
Comment: C: Obtain the LD matrix from a list of SNP
7.4 years ago by janhuang.cn ▴ 230
0
votes
0
replies
15k
views
Comment: C: Obtain the LD matrix from a list of SNP
7.4 years ago by janhuang.cn ▴ 230
0
votes
1
reply
15k
views
Comment: C: Obtain the LD matrix from a list of SNP
7.4 years ago by janhuang.cn ▴ 230
0
votes
1
reply
15k
views
Comment: C: Obtain the LD matrix from a list of SNP
7.4 years ago by janhuang.cn ▴ 230
0
votes
1
reply
15k
views
Comment: C: Obtain the LD matrix from a list of SNP
7.4 years ago by janhuang.cn ▴ 230
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