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6
votes
5
replies
12k
views
Relatedness vs relatedness2 from vcftools give different results
Relatedness Kinship
updated 10 months ago by • 0 • written 6.8 years ago by ▴ 610
0
votes
1
reply
538
views
Big Difference cell estimation between emptydrops and cell ranger?
cellranger snRNASeq emptydrops
updated 12 weeks ago by • 0 • written 2.4 years ago by ▴ 610
0
votes
0
replies
667
views
Comment: Comment: complexity in sn/scRNASeq explanation
2.4 years ago by Sharon ▴ 610
2
votes
2
replies
667
views
complexity in sn/scRNASeq explanation
snscRNASeq
2.4 years ago by Sharon ▴ 610
8
votes
6
replies
4.9k
views
How tximport work with gencode transcripts?
RNA-Seq R
updated 3.3 years ago by 88k • written 6.4 years ago by ▴ 610
4
votes
8
replies
5.3k
views
How can I convert from bed to bed12 format?
BED bed12
updated 3.8 years ago by ▴ 130 • written 6.6 years ago by ▴ 610
0
votes
0
replies
1.0k
views
Comment: C: Get Germline variants from Biomart
4.4 years ago by Sharon ▴ 610
0
votes
0
replies
1.0k
views
Comment: C: Get Germline variants from Biomart
4.4 years ago by Sharon ▴ 610
2
votes
6
replies
1.0k
views
Get Germline variants from Biomart
getBM filter
4.4 years ago by Sharon ▴ 610
1
vote
2
replies
1.0k
views
Answer: A: Get Germline variants from Biomart
4.4 years ago by Sharon ▴ 610
4
votes
6
replies
4.7k
views
Annovar for mouse buildver and downdb?
vcf annovar
updated 4.4 years ago by • 0 • written 6.6 years ago by ▴ 610
3
votes
2
replies
7.0k
views
Do genes starting with Gm have a canonical name yet?
RNA-Seq
updated 4.6 years ago by 20 • written 6.4 years ago by ▴ 610
2
votes
1
reply
4.2k
views
Comment: C: GT 2/3, or 3/3 or 2/2 in vcf
4.6 years ago by Sharon ▴ 610
0
votes
0
replies
8.5k
views
Comment: C: How to fix this strand flips for Michigan Imputation Server?
5.5 years ago by Sharon ▴ 610
0
votes
0
replies
12k
views
Comment: C: Relatedness vs relatedness2 from vcftools give different results
5.6 years ago by Sharon ▴ 610
0
votes
1
reply
4.7k
views
Comment: C: Annovar for mouse buildver and downdb?
5.6 years ago by Sharon ▴ 610
4
votes
2
replies
2.4k
views
How to remove duplicate sites and inconsistent sites from a VCF?
vcf plink michigan impute server
updated 5.9 years ago by 20 • written 6.0 years ago by ▴ 610
9
votes
8
replies
3.5k
views
6 follow
Suggested pipelines for finding somatic mutations using RNAseq in normal and tumor cells
SomaticMutations RNA-Seq
updated 3.5 years ago by 44k • written 7.0 years ago by ▴ 610
0
votes
1
reply
8.5k
views
Comment: C: How to fix this strand flips for Michigan Imputation Server?
5.9 years ago by Sharon ▴ 610
0
votes
1
reply
8.5k
views
Comment: C: How to fix this strand flips for Michigan Imputation Server?
6.0 years ago by Sharon ▴ 610
0
votes
1
reply
8.5k
views
Comment: C: How to fix this strand flips for Michigan Imputation Server?
6.0 years ago by Sharon ▴ 610
10
votes
10
replies
8.5k
views
How to fix this strand flips for Michigan Imputation Server?
SNP Imputation
updated 6.0 years ago by ★ 9.5k • written 6.0 years ago by ▴ 610
1
vote
0
replies
2.4k
views
Comment: C: How to remove duplicate sites and inconsistent sites from a VCF?
6.0 years ago by Sharon ▴ 610
0
votes
0
replies
1.6k
views
Comment: C: Validate interesting gene from a burden test and association studies (SkatO, etc
6.4 years ago by Sharon ▴ 610
4
votes
3
replies
1.6k
views
Validate interesting gene from a burden test and association studies (SkatO, etc)
snp skat association validation burden
updated 6.4 years ago by 47k • written 6.4 years ago by ▴ 610
1
vote
0
replies
4.9k
views
Comment: C: How tximport work with gencode transcripts?
6.4 years ago by Sharon ▴ 610
0
votes
1
reply
4.9k
views
Comment: C: How tximport work with gencode transcripts?
6.4 years ago by Sharon ▴ 610
0
votes
0
replies
2.3k
views
Answer: A: Checking steps to analyze snp-array data for variants detection
6.5 years ago by Sharon ▴ 610
0
votes
1
reply
2.3k
views
Checking steps to analyze snp-array data for variants detection
SNP SNP-ARRAY
6.5 years ago by Sharon ▴ 610
0
votes
0
replies
771
views
Can we detect or guess or estimate phenocopies computationally?
exome data
6.5 years ago by Sharon ▴ 610
0
votes
0
replies
2.0k
views
Comment: C: How to present/evaluate RNAseq deconvolution results?
6.5 years ago by Sharon ▴ 610
0
votes
3
replies
2.0k
views
How to present/evaluate RNAseq deconvolution results?
RNA-Seq
updated 6.5 years ago by 147k • written 6.5 years ago by ▴ 610
0
votes
0
replies
1.4k
views
Any effect for flanking regions on variants ??
Whole Genome Variants
6.5 years ago by Sharon ▴ 610
1
vote
1
reply
1.8k
views
Comment: C: Coverage in whole genome sequencing
6.5 years ago by Sharon ▴ 610
3
votes
1
reply
1.8k
views
Answer: A: Coverage in whole genome sequencing
6.5 years ago by Sharon ▴ 610
0
votes
0
replies
2.1k
views
whole genome annotation using annovar, what is -xref example/gene_xref.txt?
whole genome Annovar
6.5 years ago by Sharon ▴ 610
0
votes
0
replies
1.4k
views
Comment: C: Genes' length to get RPKM if features count is not used?
6.5 years ago by Sharon ▴ 610
2
votes
2
replies
1.4k
views
Genes' length to get RPKM if features count is not used?
RNA-Seq edgeR salmon RPKM
updated 6.5 years ago by 35k • written 6.5 years ago by ▴ 610
0
votes
0
replies
1.9k
views
Comment: C: Help explain novel lncRNA results
6.6 years ago by Sharon ▴ 610
0
votes
0
replies
1.9k
views
Comment: C: Help explain novel lncRNA results
6.6 years ago by Sharon ▴ 610
0
votes
1
reply
1.9k
views
Comment: C: Help explain novel lncRNA results
6.6 years ago by Sharon ▴ 610
2
votes
6
replies
1.9k
views
Help explain novel lncRNA results
lncRNA RNA-Seq
6.6 years ago by Sharon ▴ 610
0
votes
0
replies
5.3k
views
Comment: C: How can I convert from bed to bed12 format?
6.6 years ago by Sharon ▴ 610
0
votes
1
reply
5.3k
views
Comment: C: How can I convert from bed to bed12 format?
6.6 years ago by Sharon ▴ 610
0
votes
1
reply
5.3k
views
Comment: C: How can I convert from bed to bed12 format?
6.6 years ago by Sharon ▴ 610
1
vote
0
replies
1.9k
views
Comment: C: Variant with AD 14,3 is heterozygote?
6.6 years ago by Sharon ▴ 610
0
votes
1
reply
1.9k
views
Comment: C: Variant with AD 14,3 is heterozygote?
6.6 years ago by Sharon ▴ 610
1
vote
0
replies
1.9k
views
Comment: C: Variant with AD 14,3 is heterozygote?
6.6 years ago by Sharon ▴ 610
9
votes
7
replies
1.9k
views
Variant with AD 14,3 is heterozygote?
Exome VCF
updated 6.6 years ago by ★ 2.9k • written 6.6 years ago by ▴ 610
0
votes
0
replies
1.6k
views
Comment: C: cufflinks missing some annotations?
6.6 years ago by Sharon ▴ 610
225 results • Page 1 of 5
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