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Comment: C: Issue with replicating from a research paper-motifs
5.6 years ago by GouthamAtla 12k
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1
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1.4k
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Comment: C: Normalisation of reference dataset for scRNA cell type annotation
5.6 years ago by GouthamAtla 12k
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1.4k
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Comment: C: Normalisation of reference dataset for scRNA cell type annotation
5.6 years ago by GouthamAtla 12k
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1
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46k
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Comment: C: Get chromosome sizes from fasta file
updated 5.6 years ago by 44k • written 8.8 years ago by 12k
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1.2k
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Comment: C: Identifying differential histone mark (H3k27me3 and H3k4me3) in treated and cont
5.6 years ago by GouthamAtla 12k
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0
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1.2k
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Comment: C: How to find transcription factor binding for region?
5.6 years ago by GouthamAtla 12k
3
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1
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1.4k
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Answer: A: Use the single cell RNA-seq data for normal transcriptome analysis
5.6 years ago by GouthamAtla 12k
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1
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2.6k
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Comment: C: Looking for some feedback on my TCGA survival analysis approach. Any glaring fla
5.6 years ago by GouthamAtla 12k
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1
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1.4k
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Comment: C: Use the single cell RNA-seq data for normal transcriptome analysis
5.6 years ago by GouthamAtla 12k
4
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1
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2.2k
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Answer: A: Getting motif instances corresponding to regions
5.6 years ago by GouthamAtla 12k
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0
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1.8k
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Comment: C: Approximate matching to find similar DNA sequence
5.7 years ago by GouthamAtla 12k
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1
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4.3k
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Comment: C: Applying machine learning algorithms on RNAseq data using MLSeq package or other
5.7 years ago by GouthamAtla 12k
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1
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1.5k
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Comment: C: Human genome annotation
5.7 years ago by GouthamAtla 12k
2
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0
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8.9k
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Comment: C: % of change and log2 fold change (L2FC)?
5.7 years ago by GouthamAtla 12k
7
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1
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8.9k
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Answer: C: % of change and log2 fold change (L2FC)?
5.7 years ago by GouthamAtla 12k
1
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1
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4.5k
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Comment: C: Insert size of -20bp with ATAC-seq?
5.7 years ago by GouthamAtla 12k
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1
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1.1k
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Comment: C: how to perform interaction and binding site between lncRNA and mRNA?
5.7 years ago by GouthamAtla 12k
1
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0
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5.0k
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Comment: C: Differences between motif enrichment analysis and footprinting in the context of
5.7 years ago by GouthamAtla 12k
5
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1
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5.0k
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Answer: A: Differences between motif enrichment analysis and footprinting in the context of
5.7 years ago by GouthamAtla 12k
1
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0
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3.2k
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Answer: A: Mapping to transcriptome with bowtie2 vs mapping to genome using STAR
5.7 years ago by GouthamAtla 12k
2
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3
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3.2k
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Mapping to transcriptome with bowtie2 vs mapping to genome using STAR
RNA-Seq bowtie2 STAR
5.7 years ago by GouthamAtla 12k
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0
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3.2k
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Comment: C: Mapping to transcriptome with bowtie2 vs mapping to genome using STAR
5.7 years ago by GouthamAtla 12k
0
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1
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2.9k
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Comment: C: the peaks of ChIPseq are few
5.7 years ago by GouthamAtla 12k
1
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1
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2.9k
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Answer: A: the peaks of ChIPseq are few
5.7 years ago by GouthamAtla 12k
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1
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5.1k
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Comment: C: Why did FastQC reports get WORSE after trimming my data?
5.7 years ago by GouthamAtla 12k
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0
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1.3k
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Answer: A: How does RNA relative abundance relate to SNPs and eQTLs?
5.7 years ago by GouthamAtla 12k
0
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1
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1.9k
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Comment: C: Extrapolate transcripts that dictate difference between samples in PCA
5.7 years ago by GouthamAtla 12k
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2
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1.9k
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Comment: C: Extrapolate transcripts that dictate difference between samples in PCA
5.7 years ago by GouthamAtla 12k
2
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1
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1.9k
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Answer: A: Extrapolate transcripts that dictate difference between samples in PCA
5.7 years ago by GouthamAtla 12k
0
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1
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3.3k
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Comment: C: The effect of sample size and relatedness in target sample in polygenic risk sco
5.7 years ago by GouthamAtla 12k
1
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0
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2.3k
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Comment: C: How extract the longest overlap?
5.7 years ago by GouthamAtla 12k
4
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2
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2.3k
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Answer: A: How extract the longest overlap?
5.7 years ago by GouthamAtla 12k
1
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1
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2.6k
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Comment: C: What does this mean?
5.7 years ago by GouthamAtla 12k
0
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0
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4.9k
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Comment: C: How to get number of exons for each transcript in biomart
5.8 years ago by GouthamAtla 12k
0
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0
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2.7k
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Answer: A: Gene list of Neuronal Markers for TSNE plot
5.8 years ago by GouthamAtla 12k
2
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1
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5.2k
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Comment: C: Reduce number of reads from 100M to 50M in the sample from the existing RNA-Seq
5.8 years ago by GouthamAtla 12k
0
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0
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1.6k
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Comment: C: Convert regions from genomic coordinates to transcript coordinates
5.8 years ago by GouthamAtla 12k
0
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0
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7.8k
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Comment: C: Remove duplicates in an extremely large text file
5.8 years ago by GouthamAtla 12k
2
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0
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1.3k
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Answer: A: Single cell RNAseq differential genome wide expression significance
5.8 years ago by GouthamAtla 12k
0
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0
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2.7k
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Comment: C: How to calculate the shortest path between each pairs of genes in WGCNA
5.8 years ago by GouthamAtla 12k
0
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1
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2.7k
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Answer: A: How to calculate the shortest past between each pairs of genes in WGCNA
5.8 years ago by GouthamAtla 12k
1
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0
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3.0k
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Comment: C: Duplicated ATAC-Seq peaks called by MACS2
5.8 years ago by GouthamAtla 12k
1
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1
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2.2k
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Answer: A: Customising bedtools shuffle command
5.8 years ago by GouthamAtla 12k
0
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0
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1.4k
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Comment: C: Significance of motifs around mutations
5.8 years ago by GouthamAtla 12k
2
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0
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6.4k
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Comment: C: Is blacklisted regions filtering in ChIP-seq still needed? (let's talk about the
5.8 years ago by GouthamAtla 12k
1
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0
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1.4k
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Comment: C: Significance of motifs around mutations
5.8 years ago by GouthamAtla 12k
1
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1
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1.4k
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Answer: A: Significance of motifs around mutations
5.8 years ago by GouthamAtla 12k
0
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0
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1.4k
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Answer: A: Differential Expression of Single Gene
5.8 years ago by GouthamAtla 12k
3
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1
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3.0k
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Comment: C: Duplicated ATAC-Seq peaks called by MACS2
5.8 years ago by GouthamAtla 12k
1
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1
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1.7k
views
Comment: C: GTEx for brain data
5.8 years ago by GouthamAtla 12k
1,490 results • Page 6 of 30
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