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Comment: C: I do not find DEG's with EdgeR that I do find with other tools
6.5 years ago by GouthamAtla 12k
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4.6k
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Answer: A: Differential lncRNA-mRNA co-expression
6.5 years ago by GouthamAtla 12k
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1
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2.3k
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Comment: C: Which HTSeq mode is suitable for RNAseq data to be used for differential gene ex
6.5 years ago by GouthamAtla 12k
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1
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2.3k
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Comment: C: Which HTSeq mode is suitable for RNAseq data to be used for differential gene ex
6.5 years ago by GouthamAtla 12k
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1
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3.7k
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Comment: C: Should I quit PhD program?
6.5 years ago by GouthamAtla 12k
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3.7k
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Answer: C: Should I quit PhD program?
6.5 years ago by GouthamAtla 12k
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1.4k
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Answer: A: how can I compare two samples of RNA-seq Generally
6.6 years ago by GouthamAtla 12k
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3.7k
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Comment: C: Java TreeView like tools
6.6 years ago by GouthamAtla 12k
1
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1.4k
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Comment: C: Phased Genome, Want reads From Both Alleles
6.6 years ago by GouthamAtla 12k
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1.4k
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Answer: A: Phased Genome, Want reads From Both Alleles
6.6 years ago by GouthamAtla 12k
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8.7k
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Comment: C: List of TSS from GTF file
6.6 years ago by GouthamAtla 12k
1
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3.6k
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Comment: C: Do I have to mark duplicates before mapping the reads
6.6 years ago by GouthamAtla 12k
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3.6k
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Answer: A: Do I have to mark duplicates before mapping the reads
6.6 years ago by GouthamAtla 12k
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1.2k
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Comment: C: split vcf, choice
6.6 years ago by GouthamAtla 12k
1
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1
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1.8k
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Comment: C: RNA-Seq identify stably expressed genes
6.6 years ago by GouthamAtla 12k
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1.8k
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Comment: C: Plot stranded RNA-seq data at gene level
6.6 years ago by GouthamAtla 12k
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2.4k
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Comment: C: eRNA from RNASeq data
6.6 years ago by GouthamAtla 12k
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1
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1.8k
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Comment: C: RNA-Seq identify stably expressed genes
6.6 years ago by GouthamAtla 12k
0
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0
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2.4k
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Comment: C: eRNA from RNASeq data
6.6 years ago by GouthamAtla 12k
0
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1.1k
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Comment: C: differential expression pattern of different isoforms of a gene
6.6 years ago by GouthamAtla 12k
1
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1
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1.3k
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Comment: C: is it necessary to normalize between a Paired-End and Single-End library?
6.6 years ago by GouthamAtla 12k
0
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0
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2.4k
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Answer: A: eRNA from RNASeq data
6.6 years ago by GouthamAtla 12k
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1
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1.3k
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Comment: C: How to separe eRNA by orientation from with GRO-SEQ data
6.7 years ago by GouthamAtla 12k
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1
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2.0k
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Comment: C: Extracting counts of reads into a matrix
6.7 years ago by GouthamAtla 12k
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3.9k
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Comment: C: On the significance of the overlap between lists of genes
6.7 years ago by GouthamAtla 12k
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1.1k
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Comment: C: lnc rna sequence analysis
6.7 years ago by GouthamAtla 12k
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2.1k
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Answer: A: tool to link transcription factors (DEGs) with target genes (DEGs)?
6.7 years ago by GouthamAtla 12k
1
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0
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1.2k
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Comment: C: Should RNA-seq get conducted at the same time/batch?
6.8 years ago by GouthamAtla 12k
0
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0
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
6.8 years ago by GouthamAtla 12k
0
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1
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17k
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Comment: C: What are the best tools for differential detection between ATAC-seq samples?
6.8 years ago by GouthamAtla 12k
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1.3k
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Comment: C: cut mt,x and unknown chromosomes
6.9 years ago by GouthamAtla 12k
1
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0
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298
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Comment: C: perl script to grep a part of header from fasta seq file
6.9 years ago by GouthamAtla 12k
2
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1
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1.5k
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Answer: A: Comparing transcriptomic data of the same species from different developmental s
6.9 years ago by GouthamAtla 12k
2
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1
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1.3k
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Answer: A: How to choose peak-associated genes for verification of Chip-seq recovered Motif
6.9 years ago by GouthamAtla 12k
1
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1
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7.7k
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Comment: C: Extracting differentially expressed genes in R
6.9 years ago by GouthamAtla 12k
3
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6.0k
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Answer: A: Why estimate fragment size of ChIP-seq with SPP when using Macs2 for peak callin
6.9 years ago by GouthamAtla 12k
0
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0
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1.8k
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Comment: C: Finding difference in read depth between two BAM files
7.0 years ago by GouthamAtla 12k
2
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1
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5.8k
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Comment: C: Tools for finding gene clusters in RNA-seq differential expression data?
7.0 years ago by GouthamAtla 12k
0
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0
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2.3k
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Answer: A: Time series analysis from ChIP-Seq data
7.1 years ago by GouthamAtla 12k
1
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0
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4.8k
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Comment: C: What is the common method(s) to detect eRNAs by using RNA-seq data?
7.1 years ago by GouthamAtla 12k
1
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1
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4.8k
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Comment: C: What is the common method(s) to detect eRNAs by using RNA-seq data?
7.1 years ago by GouthamAtla 12k
0
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2
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4.8k
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Comment: C: What is the common method(s) to detect eRNAs by using RNA-seq data?
7.1 years ago by GouthamAtla 12k
1
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1
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4.8k
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Comment: C: What is the common method(s) to detect eRNAs by using RNA-seq data?
7.1 years ago by GouthamAtla 12k
0
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4
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2.6k
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Ensembl GeneBuild pipeline. Annotate RNA-Seq data
RNA-Seq annotations
updated 2.5 years ago by 44k • written 9.7 years ago by 12k
13
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12
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36k
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Estimating Insert Size From Paired End Data.
picard alignment paired-end
updated 14 months ago by 44k • written 10.8 years ago by 12k
0
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1
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1.9k
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Comment: C: How to predict the targets of Long noncoding RNA
7.1 years ago by GouthamAtla 12k
1
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0
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1.2k
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Group aware normalisation of genomics data
genomics ChIP-Seq RNA-Seq qsmooth
7.1 years ago by GouthamAtla 12k
1
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0
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5.7k
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Comment: C: ATACseq and HiC sequencing
7.1 years ago by GouthamAtla 12k
0
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1
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2.6k
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Comment: C: Gene expression values form ENCODE RNA-seq experiments
7.2 years ago by GouthamAtla 12k
0
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0
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1.1k
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Answer: A: linc noncoding RNA from chIPseq
7.2 years ago by GouthamAtla 12k
1,490 results • Page 8 of 30
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