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HaplotypeCaller VCF depth is greater than the number of reads in bam
HaplotypeCaller vcf gatk
updated 19 months ago by ▴ 10 • written 3.6 years ago by ▴ 10
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951
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Could bcftools output GQ for homozygous REF call?
samtools gvcf genotype bcftools
3.6 years ago by wang.yiguan ▴ 10
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Comment: Comment: HaplotypeCaller VCF depth is greater than the number of reads in bam
3.6 years ago by wang.yiguan ▴ 10
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1.5k
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Comment: Comment: GATK no "SB" annotation after GenotypeGVCFs
3.6 years ago by wang.yiguan ▴ 10
1
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2
replies
1.5k
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GATK no "SB" annotation after GenotypeGVCFs
gatk strandbias
3.6 years ago by wang.yiguan ▴ 10
2
votes
1
reply
1.2k
views
How to filter paired-end reads to detect inversions according to insert size
genome next-gen alignment
5.2 years ago by wang.yiguan ▴ 10
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0
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1.7k
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Comment: C: Get full sequence from sorted bam file
6.5 years ago by wang.yiguan ▴ 10
1
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2
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1.7k
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Get full sequence from sorted bam file
Assembly alignment sequencing
6.5 years ago by wang.yiguan ▴ 10
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0
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1.3k
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why JGIL no output
sequencing genome alignment
6.8 years ago by wang.yiguan ▴ 10
1
vote
1
reply
2.4k
views
Can I estimate recombination rate based on LD
genome sequencing
7.0 years ago by wang.yiguan ▴ 10
2
votes
1
reply
2.9k
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How to decide ancestral allele
genome alignment
updated 7.0 years ago by 55k • written 7.0 years ago by ▴ 10
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0
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2.0k
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Answer: A: PopGenome readMS error
7.3 years ago by wang.yiguan ▴ 10
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