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459
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How to get a partition file for phylogenetic trees?
phylogenetic python analysis partition
21 months ago by YOUSEUFS ▴ 30
0
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0
replies
377
views
How to get Pfam domain ID's for a proteome?
pfam acid protein amino interpro domains
22 months ago by YOUSEUFS ▴ 30
0
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0
replies
730
views
Comment: Comment: Collapse multifasta file by specific chromosome names
2.0 years ago by YOUSEUFS ▴ 30
0
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1
reply
730
views
Comment: Comment: Collapse multifasta file by specific chromosome names
2.0 years ago by YOUSEUFS ▴ 30
2
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4
replies
730
views
Collapse multifasta file by specific chromosome names
fasta
2.0 years ago by YOUSEUFS ▴ 30
1
vote
2
replies
656
views
Can you do a sequence alignment with an uneven number of genes? (For phylogenetics)
alignment phylogenetics sequence
updated 2.0 years ago by 147k • written 2.0 years ago by ▴ 30
0
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1
reply
509
views
How to retrieve all genes of interest from GenBank?
ncbi genbank phylogenetics mitochondria
updated 2.0 years ago by 101k • written 2.0 years ago by ▴ 30
2
votes
4
replies
704
views
How to extract and concatenate fasta lines that match substring?
fasta python
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 30
0
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1
reply
704
views
Comment: Comment: How to extract and concatenate fasta lines that match substring?
2.1 years ago by YOUSEUFS ▴ 30
0
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0
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1.1k
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Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
2.2 years ago by YOUSEUFS ▴ 30
0
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1
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1.1k
views
Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
2.2 years ago by YOUSEUFS ▴ 30
0
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1
reply
1.1k
views
Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
2.2 years ago by YOUSEUFS ▴ 30
0
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1
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1.1k
views
Comment: Comment: How to batch download multiple mitochondrial FASTA & GFF files?
2.2 years ago by YOUSEUFS ▴ 30
2
votes
8
replies
1.1k
views
How to batch download multiple mitochondrial FASTA & GFF files?
ncbi genomics mitochondria genomes entrez
2.2 years ago by YOUSEUFS ▴ 30
1
vote
1
reply
617
views
Where are the associated annotation (GFF) files for mitochondrial genomes on NCBI?
phylogenomics mitochondrial genomics NCBI
2.2 years ago by YOUSEUFS ▴ 30
1
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0
replies
617
views
Answer: Answer: Where are the associated annotation (GFF) files for mitochondrial genomes on NCB
2.2 years ago by YOUSEUFS ▴ 30
1
vote
1
reply
614
views
Extract reads from specific taxa in blob tools?
genomics metagenomics blobtools
updated 17 months ago by 44k • written 2.3 years ago by ▴ 30
1
vote
0
replies
999
views
topGO enrichment: Should the "Gene universe" also contain genes with no GO term?
enrichment RNA-Seq go topGO
4.0 years ago by YOUSEUFS ▴ 30
0
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0
replies
2.3k
views
Comment: C: GFF file multiple features for 1 gene region, how to collapse into 1?
6.1 years ago by YOUSEUFS ▴ 30
1
vote
3
replies
2.3k
views
GFF file multiple features for 1 gene region, how to collapse into 1?
RNA-Seq GFF BEDTOOLS
updated 6.1 years ago by ★ 3.3k • written 6.1 years ago by ▴ 30
8
votes
4
replies
5.0k
views
Mapping contigs & scaffolds to ref genome?
mapping Assembly bowtie2
updated 6.3 years ago by 35k • written 7.1 years ago by ▴ 30
0
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1
reply
2.3k
views
Comment: C: Aligning Draft to Reference genomes, rearranging contigs?
7.1 years ago by YOUSEUFS ▴ 30
0
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3
replies
2.3k
views
Aligning Draft to Reference genomes, rearranging contigs?
mummer Assembly alignment
7.1 years ago by YOUSEUFS ▴ 30
0
votes
1
reply
1.6k
views
Comment: A: .nt assemblage file, can I convert to FASTA?
updated 7.2 years ago by 164k • written 7.2 years ago by ▴ 30
0
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3
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1.6k
views
.nt assemblage file, can I convert to FASTA?
fasta file usage mapping bowtie
7.2 years ago by YOUSEUFS ▴ 30
0
votes
1
reply
1.4k
views
htseq-count results in missing genes
htseq-count RNA-Seq
7.3 years ago by YOUSEUFS ▴ 30
0
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0
replies
2.5k
views
Comment: C: Visualising indexed and sorted bam files
7.3 years ago by YOUSEUFS ▴ 30
6
votes
5
replies
2.5k
views
Visualising indexed and sorted bam files
rna-seq
updated 7.3 years ago by ★ 2.9k • written 7.3 years ago by ▴ 30
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