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Comment: C: Normalize FPKM values for cross-sample comparisons?
4.1 years ago by cindy.perscheid ▴ 100
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Comment: A: Normalize FPKM values for cross-sample comparisons?
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 100
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3.0k
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Comment: C: Normalize FPKM values for cross-sample comparisons?
4.1 years ago by cindy.perscheid ▴ 100
1
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3.0k
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Comment: A: Normalize FPKM values for cross-sample comparisons?
4.1 years ago by cindy.perscheid ▴ 100
2
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7
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3.0k
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Normalize FPKM values for cross-sample comparisons?
FPKM RNA-Seq Normalization
4.1 years ago by cindy.perscheid ▴ 100
0
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1
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1.2k
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TCGA MAF (mutation annotation format) to EIGENSOFT's smartpca via PLINK (or: how to get SNP centiMorgan from TCGA MAFs)?
SNP centiMorgan covariate mutation annotation
4.4 years ago by cindy.perscheid ▴ 100
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1.2k
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Answer: A: TCGA MAF (mutation annotation format) to EIGENSOFT's smartpca via PLINK (or: how
4.4 years ago by cindy.perscheid ▴ 100
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13k
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Answer: A: Error running smartpca from eigensoft
4.4 years ago by cindy.perscheid ▴ 100
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0
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1.3k
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Data set with both genetic variants and gene expressions
gene expression variants causal relationship GTEx
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 100
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1
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2.4k
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Comment: A: Master dictionary of database file (2D dictionary) using Biopython, then specify
7.1 years ago by cindy.perscheid ▴ 100
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2.4k
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Answer: A: gTEX normalize counts by genotype
7.1 years ago by cindy.perscheid ▴ 100
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2.4k
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Comment: A: Master dictionary of database file (2D dictionary) using Biopython, then specify
7.1 years ago by cindy.perscheid ▴ 100
3
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1
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3.4k
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Answer: A: calculate RPKM from featureCounts result
7.1 years ago by cindy.perscheid ▴ 100
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2.1k
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Answer: A: Multiple TCGA expression datasets
7.1 years ago by cindy.perscheid ▴ 100
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2.1k
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Answer: A: Multiple TCGA expression datasets
7.1 years ago by cindy.perscheid ▴ 100
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3.3k
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Comment: C: GDC TCGA Metadata no project ID available?
7.1 years ago by cindy.perscheid ▴ 100
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2
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3.3k
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Comment: A: GDC TCGA Metadata no project ID available?
7.1 years ago by cindy.perscheid ▴ 100
0
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9
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3.3k
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GDC TCGA Metadata no project ID available?
gene expression GDC TCGA metadata
7.1 years ago by cindy.perscheid ▴ 100
0
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0
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3.1k
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Comment: C: Experience with dbGaP controlled access from outside the US?
7.1 years ago by cindy.perscheid ▴ 100
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3.1k
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Comment: C: Experience with dbGaP controlled access from outside the US?
7.1 years ago by cindy.perscheid ▴ 100
6
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6
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3.1k
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Experience with dbGaP controlled access from outside the US?
dbGaP controlled access
updated 7.1 years ago by 20k • written 7.1 years ago by ▴ 100
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1
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3.3k
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Comment: C: GDC TCGA Metadata no project ID available?
7.1 years ago by cindy.perscheid ▴ 100
2
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10k
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Comment: C: Can I use TCGA FPKM-UQ values directly to compare across samples without any pre
7.1 years ago by cindy.perscheid ▴ 100
1
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1
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1.9k
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Answer: A: GDC data only cancer sample without normal sample
7.1 years ago by cindy.perscheid ▴ 100
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3.3k
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Comment: C: What preprocessing steps are required for the different TCGA/GDC Gene Expression
7.3 years ago by cindy.perscheid ▴ 100
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0
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5.7k
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Answer: A: Feature Selection Methods For Rnaseq Data?
7.3 years ago by cindy.perscheid ▴ 100
0
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2
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3.3k
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What preprocessing steps are required for the different TCGA/GDC Gene Expression Data (Counts, FPKM-UQ)?
RNA-Seq TCGA FPKM-UQ Normalization Gene Expression
7.4 years ago by cindy.perscheid ▴ 100
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