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2.7k
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Comment: Comment: DiffBind reports no significant differentially enriched peaks
15 months ago by chiefcat ▴ 180
0
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1
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2.7k
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Comment: Comment: DiffBind reports no significant differentially enriched peaks
17 months ago by chiefcat ▴ 180
2
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2
replies
1.0k
views
How to obtain low mappability regions from UCSC for deepTools computeGCBias?
deepTools
updated 18 months ago by 147k • written 18 months ago by ▴ 180
46
votes
4
replies
31k
views
ChIP-seq analysis: Tutorial for Beginners
ChIP-Seq Dummy
updated 4.0 years ago by 85k • written 7.2 years ago by ▴ 180
0
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0
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8.2k
views
Comment: C: Doubts related to MACS tool
updated 5.0 years ago by 44k • written 6.9 years ago by ▴ 180
5
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7
replies
3.2k
views
[ChIP-seq. signal plot] How to align the based line of different samples?
deepTools ChIP-seq normalization
updated 5.2 years ago by ▴ 40 • written 6.9 years ago by ▴ 180
0
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2
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2.7k
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Any database for downloading cancer cell-lines transcriptome differential expressed gene (DEG) list? (Normal vs cancer cell-lines)
RNA-Seq DEG database cancer microarray
updated 5.9 years ago by ★ 3.0k • written 5.9 years ago by ▴ 180
0
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0
replies
1.8k
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Homer [findMotifsGenome.pl] result interputation.
ChIP-Seq Homer motif
6.7 years ago by chiefcat ▴ 180
0
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0
replies
1.2k
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Infer protein function by Gene ontology (ChIP-seq. dataset)
ChIP-Seq Gene ontology
6.7 years ago by chiefcat ▴ 180
0
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0
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2.4k
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Comment: C: ChIP-Seq identification of peaks
6.9 years ago by chiefcat ▴ 180
0
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1
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1.8k
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Are there any tools which can plot biclustered heatmap on ChIP-seq. signal?
ChIP-Seq heatmap clustering
6.9 years ago by chiefcat ▴ 180
0
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1
reply
3.8k
views
Comment: C: [ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal
6.9 years ago by chiefcat ▴ 180
0
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1
reply
3.2k
views
Comment: C: [ChIP-seq. signal plot] How to align the based line of different samples?
6.9 years ago by chiefcat ▴ 180
2
votes
3
replies
3.8k
views
[ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal profile plotting?
deepTools ChIP-Seq biological replicates
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 180
1
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1
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5.0k
views
Input control for ChIP-seq. [Seeking for the clarification between "Library DNA conc.", "no. of raw reads", and "normalization"]
ChIP-Seq normalization sample preperation
updated 6.9 years ago by 8.9k • written 6.9 years ago by ▴ 180
1
vote
2
replies
4.0k
views
[ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in gene A & defined TSS region of gene B)
ChIPseeker annotation ChIP-Seq
updated 7.1 years ago by ★ 2.6k • written 7.1 years ago by ▴ 180
0
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1
reply
5.2k
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Comment: C: Sorting heatmaps by gene expression
7.1 years ago by chiefcat ▴ 180
0
votes
1
reply
5.2k
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Comment: C: Sorting heatmaps by gene expression
7.1 years ago by chiefcat ▴ 180
0
votes
1
reply
5.2k
views
Comment: C: Sorting heatmaps by gene expression
7.1 years ago by chiefcat ▴ 180
0
votes
1
reply
5.2k
views
Comment: C: Sorting heatmaps by gene expression
7.2 years ago by chiefcat ▴ 180
8
votes
4
replies
4.1k
views
[How to Save plots in R] DiffBind
ChIP-Seq R DiffBind
updated 7.2 years ago by ★ 2.1k • written 7.2 years ago by ▴ 180
0
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0
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1.8k
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Comment: C: Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
7.2 years ago by chiefcat ▴ 180
0
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0
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1.8k
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Comment: C: Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
7.2 years ago by chiefcat ▴ 180
4
votes
4
replies
1.8k
views
Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
ChIP-Seq
updated 7.2 years ago by 8.9k • written 7.2 years ago by ▴ 180
7
votes
3
replies
1.8k
views
Forum: [Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
NGS RNA-Seq ChIP-Seq
updated 18 months ago by 44k • written 7.2 years ago by ▴ 180
1
vote
2
replies
1.7k
views
Gene annotation from genomic features
ChIP-Seq RNA-Seq Annotation
7.2 years ago by chiefcat ▴ 180
3
votes
1
reply
1.8k
views
[Graph plotting] Correlation between gene expression & histone marks (Anyone know how to plot one/ the one like this figure?)
RNA-Seq ChIP-Seq
updated 7.2 years ago by 27k • written 7.2 years ago by ▴ 180
0
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0
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31k
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Comment: C: ChIP-seq. analysis Tutorial for Dummies
7.2 years ago by chiefcat ▴ 180
0
votes
1
reply
2.3k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
7.2 years ago by chiefcat ▴ 180
0
votes
1
reply
2.3k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
7.2 years ago by chiefcat ▴ 180
0
votes
0
replies
2.3k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
7.2 years ago by chiefcat ▴ 180
0
votes
0
replies
2.3k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
7.2 years ago by chiefcat ▴ 180
1
vote
8
replies
2.3k
views
Tools for investigating the correlation of differential gene expression & histone marks/ TF binding?
RNA-Seq ChIP-Seq Integration
updated 7.2 years ago by ▴ 110 • written 7.2 years ago by ▴ 180
1
vote
2
replies
5.9k
views
Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
ChIP-Seq Homer Motif
updated 16 months ago by ▴ 10 • written 7.2 years ago by ▴ 180
0
votes
1
reply
5.3k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
7.3 years ago by chiefcat ▴ 180
1
vote
9
replies
5.3k
views
ChIP-seq differential peak calling (Any way to set the window size for calling differential enriched peaks?)
ChIP-Seq Differential peak calling MACS2 bdgdiff
7.3 years ago by chiefcat ▴ 180
0
votes
1
reply
5.3k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
7.3 years ago by chiefcat ▴ 180
0
votes
1
reply
5.3k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
7.3 years ago by chiefcat ▴ 180
0
votes
1
reply
4.7k
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Appropriate peak length of ChIP-seq. (Histone modification having different pattern at gene body & promoter & intergenic regions)
ChIP-Seq Peak length Histone modification
updated 7.3 years ago by 12k • written 7.3 years ago by ▴ 180
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