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Comment: Comment: Cellranger: Demux pooled (hashing antibodies) GEX and VDJ 10x sequence fastq dat
7 weeks ago by bk11 ★ 3.0k
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1
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708
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Answer: Answer: dittoHeatmap; adding column labels on the heatmap
8 weeks ago by bk11 ★ 3.0k
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0
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491
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Comment: Comment: Bulk RNA seq PCA plot issues
9 weeks ago by bk11 ★ 3.0k
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0
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808
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Comment: Comment: Permutations FGSEA
10 weeks ago by bk11 ★ 3.0k
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1
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679
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Comment: Comment: Help with subset seurat object by a column in metadata
12 weeks ago by bk11 ★ 3.0k
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1
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464
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Answer: Answer: Dealing with 2 different layers of counts within RNA assay in seurat
12 weeks ago by bk11 ★ 3.0k
1
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0
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429
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Comment: Comment: Pedigree information
3 months ago by bk11 ★ 3.0k
0
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1
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344
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Answer: Answer: Merging bfiles
3 months ago by bk11 ★ 3.0k
1
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0
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356
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Comment: Comment: Extracting column from one seurat object based on common column and adding to th
3 months ago by bk11 ★ 3.0k
0
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0
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303
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Comment: Comment: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
3 months ago by bk11 ★ 3.0k
1
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0
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392
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Answer: Answer: Best approach for identifying top proteins in a single cluster in single-cell an
3 months ago by bk11 ★ 3.0k
2
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0
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448
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Answer: Answer: High inconsistency between edgeR and DESeq2
3 months ago by bk11 ★ 3.0k
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1
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564
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Answer: Answer: Best practice for gene ontology/pathway/geneset enrichment in 10x data
3 months ago by bk11 ★ 3.0k
0
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0
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410
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Answer: Answer: Plink HWE QC question
3 months ago by bk11 ★ 3.0k
0
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1
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326
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Comment: Comment: How to merge two species of scATAC data
3 months ago by bk11 ★ 3.0k
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1
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356
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Comment: Comment: CCA integration
3 months ago by bk11 ★ 3.0k
0
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0
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494
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Answer: Answer: Enhanced Volcano not working on ANY data. Coerces everything to NaN
4 months ago by bk11 ★ 3.0k
0
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0
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446
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Comment: Comment: Using findmarker of seurat with different test.use but getting the same resulat.
4 months ago by bk11 ★ 3.0k
2
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0
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420
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Answer: Answer: Updating phenotype column for .ped .fam files (PLINK --pheno not working)
4 months ago by bk11 ★ 3.0k
0
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0
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1.2k
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Answer: Answer: Remove part of a header in a fasta file
4 months ago by bk11 ★ 3.0k
0
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0
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575
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Comment: Comment: Seurat V5 Subscript Out of Bounds Error
4 months ago by bk11 ★ 3.0k
0
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1
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441
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Comment: Comment: R package to visualize multiple aligned chromatograms
4 months ago by bk11 ★ 3.0k
1
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1
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434
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Answer: Answer: Appending a Poly-A Tail to a Reference Transcriptome
4 months ago by bk11 ★ 3.0k
2
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1
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651
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Answer: Answer: Plotting LD heat map with plink.ld result
4 months ago by bk11 ★ 3.0k
0
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0
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601
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Comment: Comment: Last against ncbi nr database
4 months ago by bk11 ★ 3.0k
1
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0
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252
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Comment: Comment: QC for UKB GWAS data
4 months ago by bk11 ★ 3.0k
1
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1
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601
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Comment: Comment: Last against ncbi nr database
4 months ago by bk11 ★ 3.0k
1
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1
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429
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Comment: Comment: Where to find open access data of SNP arrays to perform GWAS
4 months ago by bk11 ★ 3.0k
0
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0
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488
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Comment: Comment: Unable to open HDF5 file
4 months ago by bk11 ★ 3.0k
1
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0
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415
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Comment: Comment: plink2 giving multiple errors
5 months ago by bk11 ★ 3.0k
0
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1
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415
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Comment: Comment: plink2 giving multiple errors
5 months ago by bk11 ★ 3.0k
0
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0
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279
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Comment: Comment: how to visualize Geno Ontology classification
5 months ago by bk11 ★ 3.0k
1
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1
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314
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Answer: Answer: Remove bacterial and protoza from Kraken2 EuPathDB
5 months ago by bk11 ★ 3.0k
1
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0
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910
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Comment: Comment: Can't increase font size for x axis
5 months ago by bk11 ★ 3.0k
2
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1
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910
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Answer: Answer: Can't increase font size for x axis
5 months ago by bk11 ★ 3.0k
0
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0
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2.1k
views
Answer: Answer: Good Bioinformatics Jokes/Puns?
5 months ago by bk11 ★ 3.0k
0
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1
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862
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Answer: Answer: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
6 months ago by bk11 ★ 3.0k
0
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1
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782
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Comment: Comment: Histogram of normalized counts for each cell type
6 months ago by bk11 ★ 3.0k
1
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0
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828
views
Comment: Comment: ROH and Manhattan plot
6 months ago by bk11 ★ 3.0k
2
votes
1
reply
782
views
Answer: Answer: Histogram of normalized counts for each cell type
updated 6 months ago by 44k • written 6 months ago by ★ 3.0k
1
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1
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828
views
Comment: Comment: ROH and Manhattan plot
6 months ago by bk11 ★ 3.0k
0
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1
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1.0k
views
Comment: Comment: Subset cells in Seurat data based on reads and gene expression
updated 6 months ago by 44k • written 6 months ago by ★ 3.0k
0
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1
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1.0k
views
Answer: Answer: Subset cells in Seurat data based on reads and gene expression
updated 6 months ago by 44k • written 6 months ago by ★ 3.0k
1
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1
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747
views
Answer: Answer: Am I getting TPM correct from tcga?
updated 6 months ago by 44k • written 6 months ago by ★ 3.0k
0
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0
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823
views
Comment: Comment: METAL ERROR: The command you issued could not be processed ...
6 months ago by bk11 ★ 3.0k
2
votes
1
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599
views
Answer: Answer: Consistent cluster coloring
6 months ago by bk11 ★ 3.0k
1
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1
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905
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Answer: Answer: Slot to pull data from for DoHeatmap
6 months ago by bk11 ★ 3.0k
1
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1
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478
views
Comment: Comment: Phasing human samples with Shapeit4
6 months ago by bk11 ★ 3.0k
1
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0
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384
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Answer: Answer: MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.
6 months ago by bk11 ★ 3.0k
1
vote
1
reply
828
views
Comment: Comment: ROH and Manhattan plot
6 months ago by bk11 ★ 3.0k
473 results • Page 1 of 10
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