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Answer: Answer: How to determine n and c terminal nucleotide bases from fasta sequences via R or
3 months ago by bk11 ★ 3.0k
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479
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Comment: Comment: Cellranger: Demux pooled (hashing antibodies) GEX and VDJ 10x sequence fastq dat
4 months ago by bk11 ★ 3.0k
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1.0k
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Answer: Answer: dittoHeatmap; adding column labels on the heatmap
5 months ago by bk11 ★ 3.0k
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708
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Comment: Comment: Bulk RNA seq PCA plot issues
5 months ago by bk11 ★ 3.0k
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1.2k
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Comment: Comment: Permutations FGSEA
5 months ago by bk11 ★ 3.0k
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1
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1.1k
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Comment: Comment: Help with subset seurat object by a column in metadata
6 months ago by bk11 ★ 3.0k
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1
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857
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Answer: Answer: Dealing with 2 different layers of counts within RNA assay in seurat
6 months ago by bk11 ★ 3.0k
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549
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Comment: Comment: Pedigree information
6 months ago by bk11 ★ 3.0k
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446
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Answer: Answer: Merging bfiles
6 months ago by bk11 ★ 3.0k
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0
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436
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Comment: Comment: Extracting column from one seurat object based on common column and adding to th
6 months ago by bk11 ★ 3.0k
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376
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Comment: Comment: Pre-imputation checks using 1000G data (hg19) for a hg38 VCF
6 months ago by bk11 ★ 3.0k
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496
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Answer: Answer: Best approach for identifying top proteins in a single cluster in single-cell an
6 months ago by bk11 ★ 3.0k
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575
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Answer: Answer: High inconsistency between edgeR and DESeq2
6 months ago by bk11 ★ 3.0k
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1
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781
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Answer: Answer: Best practice for gene ontology/pathway/geneset enrichment in 10x data
6 months ago by bk11 ★ 3.0k
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0
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826
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Answer: Answer: Plink HWE QC question
6 months ago by bk11 ★ 3.0k
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1
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422
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Comment: Comment: How to merge two species of scATAC data
7 months ago by bk11 ★ 3.0k
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1
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535
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Comment: Comment: CCA integration
7 months ago by bk11 ★ 3.0k
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642
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Answer: Answer: Enhanced Volcano not working on ANY data. Coerces everything to NaN
7 months ago by bk11 ★ 3.0k
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619
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Comment: Comment: Using findmarker of seurat with different test.use but getting the same resulat.
7 months ago by bk11 ★ 3.0k
2
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630
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Answer: Answer: Updating phenotype column for .ped .fam files (PLINK --pheno not working)
7 months ago by bk11 ★ 3.0k
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1.4k
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Answer: Answer: Remove part of a header in a fasta file
7 months ago by bk11 ★ 3.0k
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1.2k
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Comment: Comment: Seurat V5 Subscript Out of Bounds Error
7 months ago by bk11 ★ 3.0k
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1
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620
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Comment: Comment: R package to visualize multiple aligned chromatograms
7 months ago by bk11 ★ 3.0k
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1
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574
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Answer: Answer: Appending a Poly-A Tail to a Reference Transcriptome
7 months ago by bk11 ★ 3.0k
2
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1
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914
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Answer: Answer: Plotting LD heat map with plink.ld result
7 months ago by bk11 ★ 3.0k
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911
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Comment: Comment: Last against ncbi nr database
7 months ago by bk11 ★ 3.0k
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0
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372
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Comment: Comment: QC for UKB GWAS data
7 months ago by bk11 ★ 3.0k
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1
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911
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Comment: Comment: Last against ncbi nr database
7 months ago by bk11 ★ 3.0k
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1
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544
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Comment: Comment: Where to find open access data of SNP arrays to perform GWAS
7 months ago by bk11 ★ 3.0k
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0
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765
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Comment: Comment: Unable to open HDF5 file
7 months ago by bk11 ★ 3.0k
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0
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583
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Comment: Comment: plink2 giving multiple errors
8 months ago by bk11 ★ 3.0k
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1
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583
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Comment: Comment: plink2 giving multiple errors
8 months ago by bk11 ★ 3.0k
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0
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368
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Comment: Comment: how to visualize Geno Ontology classification
8 months ago by bk11 ★ 3.0k
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1
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441
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Answer: Answer: Remove bacterial and protoza from Kraken2 EuPathDB
8 months ago by bk11 ★ 3.0k
1
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0
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1.4k
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Comment: Comment: Can't increase font size for x axis
8 months ago by bk11 ★ 3.0k
2
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1
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1.4k
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Answer: Answer: Can't increase font size for x axis
8 months ago by bk11 ★ 3.0k
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0
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3.1k
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Answer: Answer: Good Bioinformatics Jokes/Puns?
9 months ago by bk11 ★ 3.0k
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1
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1.4k
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Answer: Answer: Should I normalize and scale my data again after doing subset(seu, idents=" ") i
9 months ago by bk11 ★ 3.0k
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1
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1.1k
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Comment: Comment: Histogram of normalized counts for each cell type
9 months ago by bk11 ★ 3.0k
1
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0
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1.1k
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Comment: Comment: ROH and Manhattan plot
9 months ago by bk11 ★ 3.0k
2
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1
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1.1k
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Answer: Answer: Histogram of normalized counts for each cell type
updated 9 months ago by 45k • written 9 months ago by ★ 3.0k
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1
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1.1k
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Comment: Comment: ROH and Manhattan plot
9 months ago by bk11 ★ 3.0k
0
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1
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1.5k
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Comment: Comment: Subset cells in Seurat data based on reads and gene expression
updated 9 months ago by 45k • written 9 months ago by ★ 3.0k
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1
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1.5k
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Answer: Answer: Subset cells in Seurat data based on reads and gene expression
updated 9 months ago by 45k • written 9 months ago by ★ 3.0k
1
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1
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1.0k
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Answer: Answer: Am I getting TPM correct from tcga?
updated 9 months ago by 45k • written 9 months ago by ★ 3.0k
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0
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1.1k
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Comment: Comment: METAL ERROR: The command you issued could not be processed ...
9 months ago by bk11 ★ 3.0k
2
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1
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828
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Answer: Answer: Consistent cluster coloring
9 months ago by bk11 ★ 3.0k
1
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1
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1.4k
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Answer: Answer: Slot to pull data from for DoHeatmap
9 months ago by bk11 ★ 3.0k
1
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1
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620
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Comment: Comment: Phasing human samples with Shapeit4
9 months ago by bk11 ★ 3.0k
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0
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535
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Answer: Answer: MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.
9 months ago by bk11 ★ 3.0k
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