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481
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Answer: Answer: filter 1000 genome vcf file to keep common snps
11 months ago by bk11 ★ 3.0k
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1.2k
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Answer: Answer: Liftover - Picard and plink issues when performing liftover from CanFam4 to CanF
11 months ago by bk11 ★ 3.0k
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396
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Comment: Comment: Extract Domain Architectures from Pfam / Interpro
11 months ago by bk11 ★ 3.0k
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0
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436
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Comment: Comment: Compute ld and genomic distance using clump function in plink
11 months ago by bk11 ★ 3.0k
1
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1
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2.2k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
12 months ago by bk11 ★ 3.0k
1
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1
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2.2k
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Answer: Answer: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
12 months ago by bk11 ★ 3.0k
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679
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Comment: Comment: sample data for plant RNA seq analysis
12 months ago by bk11 ★ 3.0k
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505
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Comment: Comment: RNA-Seq and ATAC-Seq quality check
12 months ago by bk11 ★ 3.0k
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0
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1.1k
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Comment: Comment: There are several lines in Manhattan plot.
12 months ago by bk11 ★ 3.0k
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517
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Answer: Answer: OSCA -open .h5 file
12 months ago by bk11 ★ 3.0k
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494
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Comment: Comment: Trimming reads before running Juicer
12 months ago by bk11 ★ 3.0k
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488
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Comment: Comment: Metabolomics Data Analysis
12 months ago by bk11 ★ 3.0k
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1
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1.1k
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Answer: Answer: There are several lines in Manhattan plot.
12 months ago by bk11 ★ 3.0k
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1
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691
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Answer: Answer: tool to find enhancer associated to gene list
12 months ago by bk11 ★ 3.0k
1
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1
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875
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Answer: Answer: How to compute Hudson's/Bhatia's FST in R OR with vcf?
12 months ago by bk11 ★ 3.0k
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1
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556
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Comment: Comment: Seeking Individual-Level Genotype Data for Linkage Disequilibrium Analysis Beyon
12 months ago by bk11 ★ 3.0k
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1.2k
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Answer: Answer: Convert bed file from hg19 to GRCH38
12 months ago by bk11 ★ 3.0k
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0
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632
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Comment: Comment: select unique samples in R
12 months ago by bk11 ★ 3.0k
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13
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2.2k
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Generating count matrix from Chromium Fixed RNA Profiling (FRP) data outside Cell Ranger.
fixed-RNA-profiling chromium cellranger scFFPE
updated 12 months ago by ▴ 70 • written 14 months ago by ★ 3.0k
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4.6k
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Comment: Comment: Cellcyclescoring did not work in Seurat V5
12 months ago by bk11 ★ 3.0k
2
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2
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929
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Answer: Answer: Alternatives to snpflip to find ambigious and flipped snps
13 months ago by bk11 ★ 3.0k
1
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1
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726
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Comment: Comment: Quality control on imputed genotypes for GWAS / application of PGS
13 months ago by bk11 ★ 3.0k
2
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0
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3.5k
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Answer: Answer: keep getting error while trying to convert Seurat object into a H5ad file
13 months ago by bk11 ★ 3.0k
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1
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1.5k
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Comment: Comment: scRNA-seq quality control
13 months ago by bk11 ★ 3.0k
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1
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1.2k
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Comment: Comment: duplicates issues when trying to convert long to wide in R
13 months ago by bk11 ★ 3.0k
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0
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643
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Answer: Answer: Perform PCA
13 months ago by bk11 ★ 3.0k
1
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1.2k
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Answer: Answer: duplicates issues when trying to convert long to wide in R
13 months ago by bk11 ★ 3.0k
1
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1
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652
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Comment: Comment: A question about the missing or not observed alleles in PLINK datasets
13 months ago by bk11 ★ 3.0k
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536
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Answer: Answer: Should I apply doublet detection for each pool seperately?
13 months ago by bk11 ★ 3.0k
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1.1k
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Comment: Comment: convert matrix files from 10X (single cell) to h5 file
13 months ago by bk11 ★ 3.0k
1
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622
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Answer: Answer: LD D-prime (D') calculation
13 months ago by bk11 ★ 3.0k
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0
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681
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Answer: Answer: Plink Error
13 months ago by bk11 ★ 3.0k
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0
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863
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Answer: Answer: XLOC gene id
13 months ago by bk11 ★ 3.0k
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0
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1.0k
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Answer: Answer: PLINK Error: No valid entries in --score file
13 months ago by bk11 ★ 3.0k
1
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1.3k
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Comment: Comment: Read multiple vcf files into R
13 months ago by bk11 ★ 3.0k
1
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0
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851
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Answer: Answer: how to merge multiple files based on column header
updated 13 months ago by 44k • written 13 months ago by ★ 3.0k
0
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1
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679
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Comment: Comment: Normalized data values very different from unnormalized counts in Seurat
13 months ago by bk11 ★ 3.0k
1
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1
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1.3k
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Comment: Comment: A question about genotyping rate
13 months ago by bk11 ★ 3.0k
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1
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1.3k
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Comment: Comment: A question about genotyping rate
14 months ago by bk11 ★ 3.0k
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1
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1.3k
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Comment: Comment: A question about genotyping rate
14 months ago by bk11 ★ 3.0k
3
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1
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1.2k
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Answer: Answer: Integration Seurat different healthy samples (fresh vs frozen)
14 months ago by bk11 ★ 3.0k
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1
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1.5k
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Answer: Answer: Doheatmap in seurat
14 months ago by bk11 ★ 3.0k
3
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0
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521
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Answer: Answer: How to retrieve the number of reads mapped for each chromosome in the BAM file o
14 months ago by bk11 ★ 3.0k
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1
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1.0k
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Comment: Comment: Bowtie2/Fastq-dump problem
14 months ago by bk11 ★ 3.0k
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0
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869
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Comment: Comment: will using samtools merge to multiple bam files also remove the redundancy ?
14 months ago by bk11 ★ 3.0k
1
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1.1k
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Answer: Answer: FPKM values for DE analysis - Why?
14 months ago by bk11 ★ 3.0k
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0
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1.0k
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Comment: Comment: error in Fastq
14 months ago by bk11 ★ 3.0k
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1
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1.5k
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Answer: Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
14 months ago by bk11 ★ 3.0k
0
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0
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666
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Comment: Comment: How do I add sample annotations to this data?
14 months ago by bk11 ★ 3.0k
1
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1
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801
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Answer: Answer: How do I remove duplicate SNPs in PLINK from more than 1 data set?
14 months ago by bk11 ★ 3.0k
473 results • Page 4 of 10
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