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0
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5.5k
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Comment: Comment: fgsea tutorial issue with BiocParallel
8 weeks ago by cwwong13 ▴ 40
3
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5
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7.1k
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normalization to "housekeeping" genes of RNAseq data vs qPCR result
qPCR RNAseq
updated 3 months ago by • 0 • written 3.8 years ago by ▴ 40
0
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2
replies
511
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Reference Genome with decoy for RNAseq data processing
STAR SALMON RNAseq
updated 3 months ago by ★ 1.3k • written 3 months ago by ▴ 40
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0
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53k
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Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
13 months ago by cwwong13 ▴ 40
2
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2
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3.0k
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Is MACS3 the same as MACS2?
MACS MACS3 MACS2
updated 17 months ago by 152k • written 17 months ago by ▴ 40
2
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2
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1.2k
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Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 17 months ago by 45k • written 17 months ago by ▴ 40
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1
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1.3k
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
17 months ago by cwwong13 ▴ 40
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0
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1.3k
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
17 months ago by cwwong13 ▴ 40
6
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5
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1.3k
views
Tests for the linear and non-linear relationship between two genes
ode drc correlation regression rnaseq
updated 17 months ago by 88k • written 17 months ago by ▴ 40
0
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0
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3.3k
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Comment: Comment: Technical replicates in Microarray data
18 months ago by cwwong13 ▴ 40
0
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1
reply
739
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Testing the interaction term in single-cell RNAseq DEG analysis
DEG scRNAseq Seurat
updated 19 months ago by 88k • written 19 months ago by ▴ 40
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0
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2.7k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
21 months ago by cwwong13 ▴ 40
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0
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2.7k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
21 months ago by cwwong13 ▴ 40
0
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1
reply
2.7k
views
Comment: Comment: Highly inflated p-values in GWAS by regenie
21 months ago by cwwong13 ▴ 40
0
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8
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2.7k
views
6 follow
Highly inflated p-values in GWAS by regenie
regenie plink gwas
updated 5 weeks ago by 12k • written 21 months ago by ▴ 40
0
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1
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1.3k
views
Comment: Comment: Keplen Meyer Curve Dropping to zero
22 months ago by cwwong13 ▴ 40
0
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0
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1.5k
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
22 months ago by cwwong13 ▴ 40
0
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2
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1.5k
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
23 months ago by cwwong13 ▴ 40
2
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7
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1.5k
views
Should we assume UMI-based scRNAseq data is not compositional?
compositional scRNAseq
22 months ago by cwwong13 ▴ 40
0
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1
reply
893
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
WGCNA r RNA-seq cluster
updated 23 months ago by 45k • written 23 months ago by ▴ 40
0
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0
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1.2k
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
2.3 years ago by cwwong13 ▴ 40
0
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0
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1.2k
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
2.3 years ago by cwwong13 ▴ 40
0
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3
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1.2k
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Summarizing permutation test/ bootstrap result for multiple samples for single-cell RNAseq data
single-cell RNA-seq
2.3 years ago by cwwong13 ▴ 40
0
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1
reply
769
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overlay ggplot graphs like those merging channels in imagej
ggplot imagej
updated 2.3 years ago by 5.0k • written 2.3 years ago by ▴ 40
1
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0
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857
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What are the differences between GSVA and ssGSEA (in layman's term)?
ssGSEA GSVA GSEA
2.3 years ago by cwwong13 ▴ 40
0
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0
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1.7k
views
Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
2.3 years ago by cwwong13 ▴ 40
0
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0
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1.7k
views
Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
2.3 years ago by cwwong13 ▴ 40
4
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4
replies
1.7k
views
Do I need to adjust the pvalue if I am only going to test one gene from omics data containing many genes?
pvalue Omics RNAseq
2.3 years ago by cwwong13 ▴ 40
2
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2
replies
1.2k
views
List of genes that are uniquely found in human (not in mouse)
orthologue genome gene
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 40
0
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1
reply
11k
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Comment: Comment: map cDNA position on genomic position
2.6 years ago by cwwong13 ▴ 40
0
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1
reply
1.1k
views
Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association WES variant genome
updated 3.0 years ago by ★ 2.9k • written 3.9 years ago by ▴ 40
0
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0
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1.8k
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Comment: Comment: Determine sex/ gender of a mouse cell line via sequencing data
3.1 years ago by cwwong13 ▴ 40
2
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3
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1.8k
views
Determine sex/ gender of a mouse cell line via sequencing data
sequencing line cell
updated 3.0 years ago by ▴ 130 • written 3.1 years ago by ▴ 40
0
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0
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3.1k
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Comment: Comment: The modules are not clustered together after WGCNA
3.1 years ago by cwwong13 ▴ 40
0
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1
reply
3.1k
views
Comment: Comment: The modules are not clustered together after WGCNA
3.2 years ago by cwwong13 ▴ 40
0
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1
reply
3.1k
views
Comment: Comment: The modules are not clustered together after WGCNA
3.2 years ago by cwwong13 ▴ 40
0
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1
reply
3.1k
views
Comment: Comment: The modules are not clustered together after WGCNA
3.2 years ago by cwwong13 ▴ 40
0
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1
reply
3.1k
views
Comment: Comment: The modules are not clustered together after WGCNA
3.2 years ago by cwwong13 ▴ 40
1
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10
replies
3.1k
views
The modules are not clustered together after WGCNA
cluster WGCNA r dendrograms
3.1 years ago by cwwong13 ▴ 40
2
votes
1
reply
949
views
Ways or packages to analyze single-cell RNAseq data that prepared following Tang's protocol
cell RNAseq seurat single
updated 3.2 years ago by 88k • written 3.2 years ago by ▴ 40
0
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1
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1.2k
views
Comment: Comment: What is the current recommended way to process/ analyze Ion Torrent Proton RNAse
3.3 years ago by cwwong13 ▴ 40
1
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3
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1.2k
views
What is the current recommended way to process/ analyze Ion Torrent Proton RNAseq data
RNAseq Proton Ion analysis Torrent pipeline processing
updated 3.3 years ago by 102k • written 3.3 years ago by ▴ 40
0
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3
replies
1.3k
views
COVID-19 WGS sequencing for individuals having mRNA vaccination
mRNA COVID vaccine WGS
updated 3.5 years ago by 11k • written 3.5 years ago by ▴ 40
0
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0
replies
739
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Molecular docking considerations
binding affinity vina biology docking structural ligand
3.6 years ago by cwwong13 ▴ 40
0
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1
reply
3.0k
views
Comment: Comment: Proper way(s) to perform enrichment analysis in R
3.7 years ago by cwwong13 ▴ 40
4
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4
replies
3.0k
views
Proper way(s) to perform enrichment analysis in R
GSEA analysis enrichment R RNAseq
updated 3.7 years ago by ▴ 90 • written 3.7 years ago by ▴ 40
0
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1
reply
7.1k
views
Comment: Comment: normalization to "housekeeping" genes of RNAseq data vs qPCR result
3.8 years ago by cwwong13 ▴ 40
0
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1
reply
1.3k
views
Comment: Comment: Assessing how similar/ different of activated pathways between multiple groups o
3.8 years ago by cwwong13 ▴ 40
0
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3
replies
1.3k
views
Assessing how similar/ different of activated pathways between multiple groups of samples
pathway correlation test hypothesis
updated 3.8 years ago by 4.7k • written 3.8 years ago by ▴ 40
0
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0
replies
557
views
assessing relative contribution of samples/ organs towards a diseases in multi-tissue RNAseq
RNAseq
3.9 years ago by cwwong13 ▴ 40
76 results • Page 1 of 2
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