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Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
6 months ago by cwwong13 ▴ 40
2
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2
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1.6k
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Is MACS3 the same as MACS2?
MACS MACS3 MACS2
updated 10 months ago by 147k • written 10 months ago by ▴ 40
2
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2
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801
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Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 10 months ago by 44k • written 11 months ago by ▴ 40
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1
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983
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
10 months ago by cwwong13 ▴ 40
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0
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983
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
10 months ago by cwwong13 ▴ 40
6
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5
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983
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Tests for the linear and non-linear relationship between two genes
ode drc correlation regression rnaseq
updated 10 months ago by 85k • written 11 months ago by ▴ 40
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2.5k
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Comment: Comment: Technical replicates in Microarray data
12 months ago by cwwong13 ▴ 40
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1
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523
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Testing the interaction term in single-cell RNAseq DEG analysis
DEG scRNAseq Seurat
updated 12 months ago by 85k • written 12 months ago by ▴ 40
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1.8k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
14 months ago by cwwong13 ▴ 40
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0
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1.8k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
14 months ago by cwwong13 ▴ 40
0
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1
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1.8k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
14 months ago by cwwong13 ▴ 40
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7
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1.8k
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Highly inflated p-values in GWAS by regenie
regenie plink gwas
14 months ago by cwwong13 ▴ 40
0
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1
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924
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Comment: Comment: Keplen Meyer Curve Dropping to zero
16 months ago by cwwong13 ▴ 40
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0
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1.1k
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
16 months ago by cwwong13 ▴ 40
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2
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1.1k
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Comment: Comment: Should we assume UMI-based scRNAseq data is not compositional?
16 months ago by cwwong13 ▴ 40
2
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7
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1.1k
views
Should we assume UMI-based scRNAseq data is not compositional?
compositional scRNAseq
16 months ago by cwwong13 ▴ 40
0
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1
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675
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
WGCNA r RNA-seq cluster
updated 16 months ago by 44k • written 16 months ago by ▴ 40
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0
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951
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
20 months ago by cwwong13 ▴ 40
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0
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951
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
20 months ago by cwwong13 ▴ 40
0
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3
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951
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Summarizing permutation test/ bootstrap result for multiple samples for single-cell RNAseq data
single-cell RNA-seq
20 months ago by cwwong13 ▴ 40
0
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1
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614
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overlay ggplot graphs like those merging channels in imagej
ggplot imagej
updated 21 months ago by 4.5k • written 21 months ago by ▴ 40
1
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0
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638
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What are the differences between GSVA and ssGSEA (in layman's term)?
ssGSEA GSVA GSEA
21 months ago by cwwong13 ▴ 40
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0
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1.2k
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Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
21 months ago by cwwong13 ▴ 40
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0
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1.2k
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Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
21 months ago by cwwong13 ▴ 40
4
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4
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1.2k
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Do I need to adjust the pvalue if I am only going to test one gene from omics data containing many genes?
pvalue Omics RNAseq
21 months ago by cwwong13 ▴ 40
2
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2
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884
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List of genes that are uniquely found in human (not in mouse)
orthologue genome gene
updated 24 months ago by 44k • written 24 months ago by ▴ 40
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1
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11k
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Comment: Comment: map cDNA position on genomic position
2.1 years ago by cwwong13 ▴ 40
0
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1
reply
918
views
Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association WES variant genome
updated 2.5 years ago by ★ 2.9k • written 3.3 years ago by ▴ 40
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0
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1.3k
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Comment: Comment: Determine sex/ gender of a mouse cell line via sequencing data
2.5 years ago by cwwong13 ▴ 40
2
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3
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1.3k
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Determine sex/ gender of a mouse cell line via sequencing data
sequencing line cell
updated 2.4 years ago by ▴ 120 • written 2.5 years ago by ▴ 40
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0
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2.5k
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Comment: Comment: The modules are not clustered together after WGCNA
2.6 years ago by cwwong13 ▴ 40
0
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1
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2.5k
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Comment: Comment: The modules are not clustered together after WGCNA
2.6 years ago by cwwong13 ▴ 40
0
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1
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2.5k
views
Comment: Comment: The modules are not clustered together after WGCNA
2.6 years ago by cwwong13 ▴ 40
0
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1
reply
2.5k
views
Comment: Comment: The modules are not clustered together after WGCNA
2.6 years ago by cwwong13 ▴ 40
0
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1
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2.5k
views
Comment: Comment: The modules are not clustered together after WGCNA
2.6 years ago by cwwong13 ▴ 40
1
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10
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2.5k
views
The modules are not clustered together after WGCNA
cluster WGCNA r dendrograms
2.6 years ago by cwwong13 ▴ 40
2
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1
reply
807
views
Ways or packages to analyze single-cell RNAseq data that prepared following Tang's protocol
cell RNAseq seurat single
updated 2.6 years ago by 85k • written 2.6 years ago by ▴ 40
0
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1
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989
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Comment: Comment: What is the current recommended way to process/ analyze Ion Torrent Proton RNAse
2.7 years ago by cwwong13 ▴ 40
1
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3
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989
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What is the current recommended way to process/ analyze Ion Torrent Proton RNAseq data
RNAseq Proton Ion analysis Torrent pipeline processing
updated 2.7 years ago by 101k • written 2.7 years ago by ▴ 40
0
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3
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1.1k
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COVID-19 WGS sequencing for individuals having mRNA vaccination
mRNA COVID vaccine WGS
updated 2.9 years ago by 11k • written 2.9 years ago by ▴ 40
0
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0
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600
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Molecular docking considerations
binding affinity vina biology docking structural ligand
3.1 years ago by cwwong13 ▴ 40
0
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1
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2.5k
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Comment: Comment: Proper way(s) to perform enrichment analysis in R
3.2 years ago by cwwong13 ▴ 40
4
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4
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2.5k
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Proper way(s) to perform enrichment analysis in R
GSEA analysis enrichment R RNAseq
updated 3.2 years ago by ▴ 90 • written 3.2 years ago by ▴ 40
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1
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5.1k
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Comment: Comment: normalization to "housekeeping" genes of RNAseq data vs qPCR result
3.3 years ago by cwwong13 ▴ 40
2
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4
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5.1k
views
normalization to "housekeeping" genes of RNAseq data vs qPCR result
qPCR RNAseq
updated 3.3 years ago by 85k • written 3.3 years ago by ▴ 40
0
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1
reply
1.1k
views
Comment: Comment: Assessing how similar/ different of activated pathways between multiple groups o
3.3 years ago by cwwong13 ▴ 40
0
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3
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1.1k
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Assessing how similar/ different of activated pathways between multiple groups of samples
pathway correlation test hypothesis
updated 3.3 years ago by 4.5k • written 3.3 years ago by ▴ 40
0
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0
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463
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assessing relative contribution of samples/ organs towards a diseases in multi-tissue RNAseq
RNAseq
3.3 years ago by cwwong13 ▴ 40
0
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1
reply
762
views
Association analysis with SNP
association WGS GWAS SNP WES
updated 3.3 years ago by ▴ 1000 • written 3.4 years ago by ▴ 40
0
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0
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825
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Comment: Comment: program/ software to generate large synthetic benchmark gene/ protein interactio
3.4 years ago by cwwong13 ▴ 40
74 results • Page 1 of 2
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