Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
2
replies
825
views
program/ software to generate large synthetic benchmark gene/ protein interaction network
PPI interaction benchmark network R
3.4 years ago by cwwong13 ▴ 40
0
votes
0
replies
11k
views
Comment: Comment: How To Calculate Genetic Heterogeneity From Genotype Data - How Useful Is This M
3.4 years ago by cwwong13 ▴ 40
0
votes
1
reply
1.8k
views
Comment: Comment: sequencing adapter/ index when mixing two library preparation kit
3.4 years ago by cwwong13 ▴ 40
0
votes
1
reply
1.8k
views
Comment: Comment: sequencing adapter/ index when mixing two library preparation kit
3.4 years ago by cwwong13 ▴ 40
2
votes
6
replies
1.8k
views
sequencing adapter/ index when mixing two library preparation kit
adapter RNA-Seq illumina index
updated 3.4 years ago by 14k • written 3.4 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Comment: Comment: different padj from DESeq2 when using different contrast input format
3.5 years ago by cwwong13 ▴ 40
0
votes
0
replies
1.0k
views
Comment: Comment: different padj from DESeq2 when using different contrast input format
3.5 years ago by cwwong13 ▴ 40
0
votes
4
replies
1.0k
views
different padj from DESeq2 when using different contrast input format
DESeq2 RNA-Seq
3.5 years ago by cwwong13 ▴ 40
0
votes
0
replies
684
views
Focused pathway analysis
fgsea clusterProfiler GSEA KEGG pathway
3.5 years ago by cwwong13 ▴ 40
0
votes
1
reply
2.1k
views
how to run and use the ENCODE ATAC-seq pipline
ATAC-seq ENCODE peak
updated 3.6 years ago by 22k • written 3.7 years ago by ▴ 40
0
votes
0
replies
2.1k
views
Troubleshooting abnormal ATAC-seq diagnostic plots
QC Sequencing ATAC-seq Troubleshooting
3.5 years ago by cwwong13 ▴ 40
0
votes
1
reply
1.6k
views
Comment: Comment: Can I pool RNA-seq library with ATAC-seq library and sequence in the same S4 lan
3.6 years ago by cwwong13 ▴ 40
3
votes
3
replies
1.6k
views
Can I pool RNA-seq library with ATAC-seq library and sequence in the same S4 lane?
RNA-seq Sequencing ATAC-seq
updated 3.6 years ago by 147k • written 3.6 years ago by ▴ 40
0
votes
0
replies
2.3k
views
Comment: Comment: Is it worth to analyzing low quality ATAC-seq data
3.6 years ago by cwwong13 ▴ 40
0
votes
2
replies
2.3k
views
Is it worth to analyzing low quality ATAC-seq data
ATAC-seq QC TSS
3.6 years ago by cwwong13 ▴ 40
11
votes
5
replies
1.6k
views
Does DESeq2 and EdgeR account for the increased total RNA production in one of the experimental group
RNA-Seq DESeq2 EdgeR
updated 3.7 years ago by 20k • written 3.7 years ago by ▴ 40
0
votes
1
reply
1.2k
views
Confusion of the input format for DESeq2 and EdgeR for bulk- and scRNA-seq
DESeq2 EdgeR RNA-Seq scRNA-seq
3.7 years ago by cwwong13 ▴ 40
0
votes
0
replies
841
views
Getting normalized count/ gene expression matrix for both bulk and single-cell RNA-seq
RNA-Seq scRNA-seq DESeq2 EdgeR
3.7 years ago by cwwong13 ▴ 40
0
votes
0
replies
3.5k
views
Comment: C: R object can allow duplicated column name and storing different types of values
3.7 years ago by cwwong13 ▴ 40
2
votes
3
replies
3.5k
views
R object can allow duplicated column name and storing different types of values
R python
updated 3.7 years ago by 44k • written 3.7 years ago by ▴ 40
0
votes
0
replies
1.7k
views
Comment: C: ATAC-seq bowtie2 alignment and pre-alignment adapter clipping
3.8 years ago by cwwong13 ▴ 40
1
vote
2
replies
1.7k
views
ATAC-seq bowtie2 alignment and pre-alignment adapter clipping
ATAC-seq alignment bowtie2
updated 3.8 years ago by 85k • written 3.8 years ago by ▴ 40
0
votes
0
replies
839
views
Deseq2 getting ANOVA-like result from 3 by 3 factor design
R RNA-Seq Deseq2 anova
updated 4.5 years ago by 147k • written 4.5 years ago by ▴ 40
0
votes
1
reply
1.9k
views
Calculating coverage of genes which have accounted for multiple best hits from bam/sam files
alignment next-gen bwa samtools bedtools
updated 7.2 years ago by 55k • written 7.2 years ago by ▴ 40
74 results • Page 2 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6